RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NAIF1Q69YI7 327 aaPredicted RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 LRRC31Q6UY01 552 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 H2AFVQ71UI9 128 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 DNAAF5Q86Y56 855 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 TMTC1Q8IUR5 882 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 LGI2Q8N0V4 545 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 PHTF2Q8N3S3 785 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 TERB1Q8NA31 727 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 CTNNBL1Q8WYA6 563 aaPredicted RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 THAP2Q9H0W7 228 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 XPO7Q9UIA9 1087 aaKnown RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 HS3ST4Q9Y661 456 aa14.76□□□□□ -0.05
NUP54-216ENST00000514901 MYO18AQ92614 2054 aaKnown RBP14.76□□□□□ -0.05
NUP54-216ENST00000514901 ATG2BQ96BY7 2078 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 K7EQS6 105 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 ATMINO43313 823 aaPredicted RBP14.75□□□□□ -0.05
NUP54-216ENST00000514901 RNF8O76064 485 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 ATXN1P54253 815 aaKnown RBP14.75□□□□□ -0.05
NUP54-216ENST00000514901 HDAC4P56524 1084 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 KDSRQ06136 332 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 C5orf22Q49AR2 442 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 HSF5Q4G112 596 aaPredicted RBP14.75□□□□□ -0.05
NUP54-216ENST00000514901 SH3PXD2AQ5TCZ1 1133 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 FAM131BQ86XD5 332 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 SPEM1Q8N4L4 309 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 NTAN1Q96AB6 310 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 SIK2Q9H0K1 926 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 OSBPL2Q9H1P3 480 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 RBM12Q9NTZ6 932 aaKnown RBP14.75□□□□□ -0.05
NUP54-216ENST00000514901 UVRAGQ9P2Y5 699 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 LCMT1Q9UIC8 334 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 INTUQ9ULD6 942 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 STARD13Q9Y3M8 1113 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 CACNA1HO95180 2353 aa14.75□□□□□ -0.05
NUP54-216ENST00000514901 COL4A3Q01955 1670 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 GOLGA6L3A6NEY3 463 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 CHURC1-FNTBB4DL54 471 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 CCP110O43303 1012 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 GALR2O43603 387 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 TMEM253P0C7T8 217 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 FECHP22830 423 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 CYLC1P35663 651 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 CCR3P51677 355 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 OXCT1P55809 520 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 RPS24P62847 133 aaKnown RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 OGDHQ02218 1023 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 NRG1Q02297 640 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 PIGHQ14442 188 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 FBXL22Q6P050 247 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 TRMT11Q7Z4G4 463 aaKnown RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 ANKS1BQ7Z6G8 1248 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 SLFN11Q7Z7L1 901 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 C1orf210Q8IVY1 113 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 FIBINQ8TAL6 211 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 WFIKKN2Q8TEU8 576 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 UCMAQ8WVF2 138 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 P2RY11Q96G91 374 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 RPRD1AQ96P16 312 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 PPP1R9BQ96SB3 815 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 NUP85Q9BW27 656 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 RETREG1Q9H6L5 497 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 LUC7LQ9NQ29 371 aaKnown RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 SPATA6Q9NWH7 488 aaPredicted RBP14.74□□□□□ -0.05
NUP54-216ENST00000514901 STIM2Q9P246 746 aa14.74□□□□□ -0.05
NUP54-216ENST00000514901 A0A1B0GVM2 712 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 TCAF2A6NFQ2 919 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 DRGXA6NNA5 263 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 MYO1FO00160 1098 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 NPC1O15118 1278 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 RNF40O75150 1001 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 LUC7L3O95232 432 aaKnown RBP14.73□□□□□ -0.05
NUP54-216ENST00000514901 LCA5LO95447 670 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 SGSHP51688 502 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 GSDMDP57764 484 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 SCAPQ12770 1279 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 MTAPQ13126 283 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 CDH18Q13634 790 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 EIF4HQ15056 248 aaKnown RBP14.73□□□□□ -0.05
NUP54-216ENST00000514901 SPA17Q15506 151 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 SCYL2Q6P3W7 929 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 CHST9Q7L1S5 443 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 MFN1Q8IWA4 741 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 CFAP52Q8N1V2 620 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.73□□□□□ -0.05
NUP54-216ENST00000514901 SPC24Q8NBT2 197 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 USP33Q8TEY7 942 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 EZH1Q92800 747 aaPredicted RBP14.73□□□□□ -0.05
NUP54-216ENST00000514901 ACDQ96AP0 544 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 PRICKLE1Q96MT3 831 aaPredicted RBP14.73□□□□□ -0.05
NUP54-216ENST00000514901 IRF2BPLQ9H1B7 796 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 ANLNQ9NQW6 1124 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 SPTLC3Q9NUV7 552 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 KIAA1522Q9P206 1035 aaPredicted RBP14.73□□□□□ -0.05
NUP54-216ENST00000514901 OR12D3Q9UGF7 316 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 IP6K2Q9UHH9 426 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 VANGL2Q9ULK5 521 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 CLEC4EQ9ULY5 219 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 HCN4Q9Y3Q4 1203 aa14.73□□□□□ -0.05
NUP54-216ENST00000514901 IGLV3-10A0A075B6K4 115 aa14.72□□□□□ -0.05
NUP54-216ENST00000514901 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms