RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 IGLV3-27P01718 113 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 MYOGP15173 224 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 HDCP19113 662 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 DNAJB1P25685 340 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 TNNT3P45378 269 aaPredicted RBP16.5■□□□□ 0.23
NUP54-214ENST00000514307 RPL21P46778 160 aaKnown RBP16.5■□□□□ 0.23
NUP54-214ENST00000514307 CLCN4P51793 760 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 SLC45A4Q5BKX6 768 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 FAM72AQ5TYM5 149 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 NCBP2-AS2Q69YL0 99 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 FAM72DQ6L9T8 149 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 FAM72BQ86X60 149 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 DDX42Q86XP3 938 aaKnown RBP eCLIP16.5■□□□□ 0.23
NUP54-214ENST00000514307 ART4Q93070 314 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 ANLNQ9NQW6 1124 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 DTLQ9NZJ0 730 aa16.5■□□□□ 0.23
NUP54-214ENST00000514307 PPARGC1AQ9UBK2 798 aaKnown RBP16.5■□□□□ 0.23
NUP54-214ENST00000514307 TPX2Q9ULW0 747 aaKnown RBP16.5■□□□□ 0.23
NUP54-214ENST00000514307 ZSCAN5CA6NGD5 496 aaPredicted RBP16.49■□□□□ 0.23
NUP54-214ENST00000514307 COCHO43405 550 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 CLASP2O75122 1294 aaKnown RBP16.49■□□□□ 0.23
NUP54-214ENST00000514307 HMBSP08397 361 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 HOXA9P31269 272 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 GBE1Q04446 702 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 ZNF33AQ06730 810 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 GPS1Q13098 491 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 FAM71DQ8N9W8 422 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 CCNYQ8ND76 341 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 GDF15Q99988 308 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 ZYG11BQ9C0D3 744 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 SLC28A3Q9HAS3 691 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 USP29Q9HBJ7 922 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 PAK5Q9P286 719 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 ZMYM5Q9UJ78 669 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 HS3ST4Q9Y661 456 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 VWA8A3KMH1 1905 aa16.49■□□□□ 0.23
NUP54-214ENST00000514307 DRGXA6NNA5 263 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 WASH4PA8MWX3 477 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 E9PAM4 449 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 H0YGN5 161 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 KCNN4O15554 427 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 ACSL4O60488 711 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 GCATO75600 419 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 RHOQP17081 205 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 DDX6P26196 483 aaKnown RBP eCLIP16.48■□□□□ 0.23
NUP54-214ENST00000514307 GABRR2P28476 465 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 RBM10P98175 930 aaKnown RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 SLC10A2Q12908 348 aaPredicted RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 AUHQ13825 339 aaKnown RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 SLMAPQ14BN4 828 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 TRADDQ15628 312 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 TRIP13Q15645 432 aaPredicted RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 P3H1Q32P28 736 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 HEATR6Q6AI08 1181 aaKnown RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 SLC22A17Q8WUG5 538 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 PPP2R3CQ969Q6 453 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 RTP4Q96DX8 246 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 FMO2Q99518 471 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 KLF16Q9BXK1 252 aaPredicted RBP16.48■□□□□ 0.23
NUP54-214ENST00000514307 VIPAS39Q9H9C1 493 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 ASAH2Q9NR71 780 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 ZNF510Q9Y2H8 683 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 NLRC5Q86WI3 1866 aa16.48■□□□□ 0.23
NUP54-214ENST00000514307 C5orf60A6NFR6 353 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 I6L893 689 aaPredicted RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 SEC31AO94979 1220 aaKnown RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 LATS1O95835 1130 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 OAS1P00973 400 aaKnown RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 MBL2P11226 248 aaPredicted RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 IVDP26440 423 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 RBL1P28749 1068 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 HOXC13P31276 330 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 BMP8BP34820 402 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 RPL22P35268 128 aaKnown RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 GPS2Q13227 327 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 MORF4L2Q15014 288 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ARHGAP15Q53QZ3 475 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 MS4A13Q5J8X5 152 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 MANEALQ5VSG8 457 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 IZUMO3Q5VZ72 239 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ALS2CLQ60I27 953 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 FAM109BQ6ICB4 259 aaPredicted RBP16.47■□□□□ 0.23
NUP54-214ENST00000514307 HTR3CQ8WXA8 447 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 QKIQ96PU8 341 aaKnown RBP eCLIP16.47■□□□□ 0.23
NUP54-214ENST00000514307 CORO1BQ9BR76 489 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ATXN3LQ9H3M9 355 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 TLE6Q9H808 572 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ZDHHC18Q9NUE0 388 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ETNK2Q9NVF9 386 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 ZDHHC7Q9NXF8 308 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 GRHL1Q9NZI5 618 aa16.47■□□□□ 0.23
NUP54-214ENST00000514307 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 TRAV19A0A0A6YYK7 116 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 SPDYE4A6NLX3 237 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 F5H5T6 163 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 DNALI1O14645 258 aaPredicted RBP16.46■□□□□ 0.23
NUP54-214ENST00000514307 ZNF197O14709 1029 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 POU2F2P09086 479 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 MYBL2P10244 700 aa16.46■□□□□ 0.23
NUP54-214ENST00000514307 MYL4P12829 197 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms