RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 SYCE1LA8MT33 242 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PGM3O95394 542 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CRHR1P34998 444 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 HADHAP40939 763 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ADIGQ0VDE8 80 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 C12orf29Q8N999 325 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 OR52K1Q8NGK4 314 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ZC3H15Q8WU90 426 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PDCD6IPQ8WUM4 868 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 FIZ1Q96SL8 496 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 STN1Q9H668 368 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CATSPERBQ9H7T0 1116 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 VTI1BQ9UEU0 232 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 LNPEPQ9UIQ6 1025 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 UBDO15205 165 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 MT-CO1P00395 513 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CCDC130P13994 396 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 RPL14P50914 215 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GEMP55040 296 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CSHL1Q14406 222 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 IL31Q6EBC2 164 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 TMC7Q7Z402 723 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PLD5Q8N7P1 536 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 SLC2A14Q8TDB8 520 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CCDC126Q96EE4 140 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CERS2Q96G23 380 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PPP1R2P1Q96PQ5 205 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PRPF18Q99633 342 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 WASF2Q9Y6W5 498 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PHRF1Q9P1Y6 1649 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 NCAM2O15394 837 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 EDIL3O43854 480 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GJB1P08034 283 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GRIK1P39086 918 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 NME5P56597 212 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 MAP3K7CLP57077 242 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF235Q14590 738 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 POU6F1Q14863 301 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GALNTL6Q49A17 601 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 SLC39A4Q6P5W5 647 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 RHBDF2Q6PJF5 856 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PACS1Q6VY07 963 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GPR141Q7Z602 305 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 TNS4Q8IZW8 715 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ZSCAN18Q8TBC5 510 aaPredicted RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ZFRQ96KR1 1074 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 LGMNQ99538 433 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 APBA2Q99767 749 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 TMEM79Q9BSE2 394 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 SPON2Q9BUD6 331 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CLIC5Q9NZA1 410 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 BTBD7Q9P203 1132 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 TSR3Q9UJK0 312 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 MYH7P12883 1935 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 HEATR9A2RTY3 570 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 E5RI56 91 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 PHGDHO43175 533 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 F9P00740 461 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ARL2P36404 184 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 TKTL1P51854 596 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CDH17Q12864 832 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 LPCAT4Q643R3 524 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CATSPERGQ6ZRH7 1159 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 NAT8LQ8N9F0 302 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 CELF6Q96J87 481 aaKnown RBP8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF333Q96JL9 665 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 FICDQ9BVA6 458 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 GRIP2Q9C0E4 1043 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 S100A14Q9HCY8 104 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 V9GYQ6 96 aa8.61□□□□□ -1.03
LIMCH1-216ENST00000512820 RRN3P2A6NIE6 340 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 LYNP07948 512 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ETS2P15036 469 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 PSMA4P25789 261 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 PCSK1P29120 753 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 NPY2RP49146 381 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 NAGLUP54802 743 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 GPX6P59796 221 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 SIX1Q15475 284 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ABI1Q8IZP0 508 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 CLEC4FQ8N1N0 589 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 BHLHE22Q8NFJ8 381 aaPredicted RBP8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 AFG1LQ8WV93 481 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 UCMAQ8WVF2 138 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 RMDN1Q96DB5 314 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 EPB41L4BQ9H329 900 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 DHX33Q9H6R0 707 aaKnown RBP8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 WDR41Q9HAD4 459 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 GPAMQ9HCL2 828 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 TCRBV7S3A2A0A539 114 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 USP4Q13107 963 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ZDHHC14Q8IZN3 488 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ADAM32Q8TC27 787 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 MORF4L1Q9UBU8 362 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF180Q9UJW8 692 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 TUBGCP6Q96RT7 1819 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 YDJCA8MPS7 323 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 SUPT3HB4E1H0 165 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 ZNF286BP0CG31 522 aa8.6□□□□□ -1.03
LIMCH1-216ENST00000512820 GOT1P17174 413 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms