RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 UBP1Q9NZI7 540 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 AKAP11Q9UKA4 1901 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 CNTNAP1P78357 1384 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 LRCH4O75427 683 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 USP2O75604 605 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 UBTFL6P0CB48 400 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PSMB4P28070 264 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 MBTD1Q05BQ5 628 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TCEAL1Q15170 157 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 ZDHHC24Q6UX98 284 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TKTL2Q9H0I9 626 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PCDH18Q9HCL0 1135 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 TSR3Q9UJK0 312 aaKnown RBP11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 SUFUQ9UMX1 484 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 PKP3Q9Y446 797 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 DTNAQ9Y4J8 743 aa11.03□□□□□ -0.64
LIMCH1-205ENST00000503057 KCNK1O00180 336 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 XPO1O14980 1071 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 EDF1O60869 148 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 DNAJC6O75061 913 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 DDHD2O94830 711 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 MYO1DO94832 1006 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 SUPT7LO94864 414 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 USP17L7P0C7H9 530 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 TCN1P20061 433 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 AIF1P55008 147 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 ACCSLQ4AC99 568 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 PAN2Q504Q3 1202 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 AARS2Q5JTZ9 985 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 TDRPQ86YL5 185 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 SLC4A11Q8NBS3 891 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 USP13Q92995 863 aaPredicted RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 WNK4Q96J92 1243 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 EGFRP00533 1210 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 MATKP42679 507 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 CTXN3Q4LDR2 81 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 LCA5Q86VQ0 697 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 TOP6BLQ8N6T0 577 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 HASPINQ8TF76 798 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 MRPL45Q9BRJ2 306 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 GPAMQ9HCL2 828 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 OLA1Q9NTK5 396 aaKnown RBP11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 PRKAG2Q9UGJ0 569 aa11.02□□□□□ -0.64
LIMCH1-205ENST00000503057 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 MANSC4A6NHS7 340 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 FGF10O15520 208 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 SKAP2O75563 359 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TBL3Q12788 808 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF177Q13360 481 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 CAPRIN1Q14444 709 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 POU6F1Q14863 301 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 LRRC23Q53EV4 343 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ZRANB3Q5FWF4 1079 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 RNASEH2BQ5TBB1 312 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 GPR142Q7Z601 462 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 C12orf29Q8N999 325 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ADAM32Q8TC27 787 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 CDK5RAP1Q96SZ6 601 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 PDZD7Q9H5P4 517 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 SSU72Q9NP77 194 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 NT5MQ9NPB1 228 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 PIH1D1Q9NWS0 290 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 KANSL3Q9P2N6 904 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF541Q9H0D2 1346 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 HEATR9A2RTY3 570 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 SPDYE5A6NIY4 337 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 C2CD2LO14523 706 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 CRTAMO95727 393 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 IRF1P10914 325 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 RENBPP51606 427 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TWF1Q12792 350 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 EFEMP1Q12805 493 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 WSCD1Q658N2 575 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ZNF280DQ6N043 979 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 PIGZQ86VD9 579 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 NIPA2Q8N8Q9 360 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 KLHL4Q9C0H6 718 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TRMT6Q9UJA5 497 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 CDH9Q9ULB4 789 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 RNF112Q9ULX5 631 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 RPL26L1Q9UNX3 145 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 HOXA2O43364 376 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 POMCP01189 267 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TPH1P17752 444 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 PDE1CQ14123 709 aaPredicted RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TMTC4Q5T4D3 741 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 MARC1Q5VT66 337 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 C9orf57Q5W0N0 161 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 PTRHD1Q6GMV3 140 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 TLR8Q9NR97 1041 aaKnown RBP11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 ABCC13Q9NSE7 274 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 BTBD7Q9P203 1132 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 SNX5Q9Y5X3 404 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 SNCAIPQ9Y6H5 919 aa11.02□□□□□ -0.65
LIMCH1-205ENST00000503057 GRIN2DO15399 1336 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 A0A087X1B8 175 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 A0A1W2PPM1 405 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 GLP2RO95838 553 aa11.01□□□□□ -0.65
LIMCH1-205ENST00000503057 MYCP01106 439 aaPredicted RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms