RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 EIF4EBP2Q13542 120 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 DRAP1Q14919 205 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 STX1AQ16623 288 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 PTPN20Q4JDL3 420 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 FNDC3BQ53EP0 1204 aaKnown RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 DCAF6Q58WW2 860 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 MS4A13Q5J8X5 152 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 TTC39BQ5VTQ0 682 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 FAM183BPQ6ZVS7 135 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 CHST9Q7L1S5 443 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 ARMCX6Q7L4S7 300 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 SLC26A9Q7LBE3 791 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 CCDC117Q8IWD4 279 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 WDTC1Q8N5D0 677 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 FRMD1Q8N878 549 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 ZNF397Q8NF99 534 aaPredicted RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 WFDC5Q8TCV5 224 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 SORCS1Q8WY21 1168 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 PIGKQ92643 395 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 NAA15Q9BXJ9 866 aaKnown RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 MKRN2Q9H000 416 aaKnown RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 TMEM245Q9H330 911 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 RXFP3Q9NSD7 469 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 ANO10Q9NW15 660 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 TAB2Q9NYJ8 693 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 CYP8B1Q9UNU6 501 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 PLA2G4CQ9UP65 541 aa16.3■□□□□ 0.2
HDAC4-213ENST00000496347 ASCC3Q8N3C0 2202 aaKnown RBP16.3■□□□□ 0.2
HDAC4-213ENST00000496347 PCDH15Q96QU1 1955 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 GOLGA6L7A0A1B0GV03 622 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 DCDC2BA2VCK2 349 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 IGLV3-19P01714 112 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 ERBB2P04626 1255 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 EPHX1P07099 455 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 CCR1P32246 355 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 SCNN1AP37088 669 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 RPS24P62847 133 aaKnown RBP16.29■□□□□ 0.2
HDAC4-213ENST00000496347 KCNMA1Q12791 1236 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 LMAN2Q12907 356 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 CAMK2GQ13555 558 aaPredicted RBP16.29■□□□□ 0.2
HDAC4-213ENST00000496347 KRT31Q15323 416 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 PTPRNQ16849 979 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 ZC3H12AQ5D1E8 599 aaKnown RBP16.29■□□□□ 0.2
HDAC4-213ENST00000496347 MBLAC2Q68D91 279 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 CHSY1Q86X52 802 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 TMEM35BQ8NCS4 154 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 FIBINQ8TAL6 211 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 PRCCQ92733 491 aaPredicted RBP16.29■□□□□ 0.2
HDAC4-213ENST00000496347 SLC6A17Q9H1V8 727 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.29■□□□□ 0.23e-10■■■□□ 15
HDAC4-213ENST00000496347 DDIT4Q9NX09 232 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 PILRBQ9UKJ0 227 aa16.29■□□□□ 0.2
HDAC4-213ENST00000496347 EPG5Q9HCE0 2579 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 F5H5T6 163 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 NDUFS2O75306 463 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 LUC7L3O95232 432 aaKnown RBP16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ASLP04424 464 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 POLR2EP19388 210 aaKnown RBP16.28■□□□□ 0.2
HDAC4-213ENST00000496347 CD6P30203 668 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 CD70P32970 193 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 COPAP53621 1224 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 MYL5Q02045 173 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ZNF33AQ06730 810 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 TAF5Q15542 800 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 TRIM61Q5EBN2 209 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 FKBP15Q5T1M5 1219 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 CCDC183Q5T5S1 534 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 SASS6Q6UVJ0 657 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 TMPRSS6Q8IU80 811 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 DEFB106AQ8N104 65 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ATP6V0D2Q8N8Y2 350 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 MSANTD4Q8NCY6 345 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ANKRD20A12PQ8NF67 263 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 OR2T3Q8NH03 318 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 CEP76Q8TAP6 659 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 EPS8L1Q8TE68 723 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 CYB5D2Q8WUJ1 264 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 FOXJ1Q92949 421 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ERLEC1Q96DZ1 483 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 LMLNQ96KR4 655 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 HSPA12BQ96MM6 686 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 STK33Q9BYT3 514 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 TMEM51Q9NW97 253 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 RRN3Q9NYV6 651 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 SLC12A6Q9UHW9 1150 aa16.28■□□□□ 0.2
HDAC4-213ENST00000496347 XPO7Q9UIA9 1087 aaKnown RBP16.28■□□□□ 0.2
HDAC4-213ENST00000496347 ATXN2Q99700 1313 aaKnown RBP16.27■□□□□ 0.2
HDAC4-213ENST00000496347 KCNU1A8MYU2 1149 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 ABCB4P21439 1286 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 TACR2P21452 398 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 ITPKAP23677 461 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 OXTRP30559 389 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 PITX1P78337 314 aaPredicted RBP16.27■□□□□ 0.2
HDAC4-213ENST00000496347 SLC6A3Q01959 620 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 PPM1JQ5JR12 505 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 RAP1GAP2Q684P5 730 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 OR6B2Q6IFH4 312 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 SLC23A3Q6PIS1 610 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 LGI2Q8N0V4 545 aa16.27■□□□□ 0.2
HDAC4-213ENST00000496347 KDM1BQ8NB78 822 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms