RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 EIF2AK2P19525 551 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ME2P23368 584 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PIK3R1P27986 724 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 MAGEA12P43365 314 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ASPAP45381 313 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 NUDT2P50583 147 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 MYL6P60660 151 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PRKCEQ02156 737 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TRPC3Q13507 836 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SEMA5AQ13591 1074 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 GK3PQ14409 553 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 EMC2Q15006 297 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SYCP2LQ5T4T6 812 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 C1QTNF12Q5T7M4 302 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 IRAK1BP1Q5VVH5 260 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 LPCAT2Q7L5N7 544 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TRMT1LQ7Z2T5 733 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 AMIGO2Q86SJ2 522 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CARM1Q86X55 608 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 EMC1Q8N766 993 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 DEPTORQ8TB45 409 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PDCD6IPQ8WUM4 868 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SREK1Q8WXA9 508 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TOP1MTQ969P6 601 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ZBTB45Q96K62 511 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TAAR1Q96RJ0 339 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 CPXM1Q96SM3 734 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PKP2Q99959 881 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF341Q9BYN7 854 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PORCNQ9H237 461 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TDRD3Q9H7E2 651 aaKnown RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 COPS7BQ9H9Q2 264 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 TCF7L2Q9NQB0 619 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PXMP2Q9NR77 195 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 PNPLA3Q9NST1 481 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 RRN3Q9NYV6 651 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 HACD3Q9P035 362 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SEPT9Q9UHD8 586 aaPredicted RBP9.94□□□□□ -0.82
SYNE1-230ENST00000495090 ADAM28Q9UKQ2 775 aa9.94□□□□□ -0.82
SYNE1-230ENST00000495090 SPDYE16A6NNV3 312 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 H3BNH8 94 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ACOT8O14734 319 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ITGBL1O95965 494 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 NPR1P16066 1061 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ZFXP17010 805 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 XRCC1P18887 633 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 GPD1P21695 349 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 VARSP26640 1264 aaKnown RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ALDH1B1P30837 517 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 PSMD8P48556 350 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 BCAR1P56945 870 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 RPS6P62753 249 aaKnown RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 PEX6Q13608 980 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 DUOXA2Q1HG44 320 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 PDCD4Q53EL6 469 aaKnown RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF394Q53GI3 561 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 BOLA3Q53S33 107 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 XKR3Q5GH77 459 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 VWA5B1Q5TIE3 1220 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ZPBP2Q6X784 338 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 MPP5Q8N3R9 675 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 EFCAB3Q8N7B9 438 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 TRIML2Q8N7C3 387 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 BHLHE22Q8NFJ8 381 aaPredicted RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 HSPBAP1Q96EW2 488 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 RANBP9Q96S59 729 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 TBCBQ99426 244 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 NAT9Q9BTE0 207 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 TARS2Q9BW92 718 aaKnown RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ZNF385DQ9H6B1 395 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 MRPL40Q9NQ50 206 aaKnown RBP9.93□□□□□ -0.82
SYNE1-230ENST00000495090 MORF4L1Q9UBU8 362 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 TJP2Q9UDY2 1190 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 FBXO40Q9UH90 709 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 CDH7Q9ULB5 785 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 MYRFQ9Y2G1 1151 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 ANKRD31Q8N7Z5 1873 aa9.93□□□□□ -0.82
SYNE1-230ENST00000495090 KPNA7A9QM74 516 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 AIM2O14862 343 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PRPSAP2O60256 369 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 TBC1D12O60347 775 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 KLHL41O60662 606 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ZMPSTE24O75844 475 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 MYCLP12524 364 aaPredicted RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 YBX3P16989 372 aaKnown RBP eCLIP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 IL4RP24394 825 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ARL2P36404 184 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 GARSP41250 739 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PHKA2P46019 1235 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SLC9B1Q4ZJI4 515 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SNX32Q86XE0 403 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 LZTR1Q8N653 840 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 PQLC3Q8N755 202 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 CNTD1Q8N815 330 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SLC7A14Q8TBB6 771 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 ADAMTS16Q8TE57 1224 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 SGF29Q96ES7 293 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 DUS3LQ96G46 650 aaKnown RBP9.92□□□□□ -0.82
SYNE1-230ENST00000495090 CDRT15Q96T59 188 aa9.92□□□□□ -0.82
SYNE1-230ENST00000495090 RMDN3Q96TC7 470 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms