RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 RUNDC1Q96C34 613 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 URB1-AS1Q96HZ7 61 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 CDCP1Q9H5V8 836 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 MAP6D1Q9H9H5 199 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 METTL14Q9HCE5 456 aaKnown RBP4.48□□□□□ -1.69
VPS50-219ENST00000495039 TCEAL9Q9UHQ7 104 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 KCNG2Q9UJ96 466 aa4.48□□□□□ -1.69
VPS50-219ENST00000495039 SMTNL1A8MU46 457 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 KRTAP9-6A8MVA2 160 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 SOCS5O75159 536 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 RFPL1O75677 317 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 DDNO94850 711 aaPredicted RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 IL18RAPO95256 599 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 CGAP01215 116 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 MT-ND5P03915 603 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 CYP1A2P05177 515 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 HMGB1P09429 215 aaKnown RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 HOXD3P31249 432 aaPredicted RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 RASSF2P50749 326 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 GPS1Q13098 491 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 SEMA3BQ13214 749 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 HMBOX1Q6NT76 420 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 SPSB3Q6PJ21 355 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 CLASRPQ8N2M8 674 aaKnown RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 GLMPQ8WWB7 406 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 MSLNLQ96KJ4 702 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 SNX22Q96L94 193 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 SPAG4Q9NPE6 437 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 HEYLQ9NQ87 328 aaPredicted RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 NCKIPSDQ9NZQ3 722 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 THRAP3Q9Y2W1 955 aaKnown RBP4.47□□□□□ -1.69
VPS50-219ENST00000495039 PTGDR2Q9Y5Y4 395 aa4.47□□□□□ -1.69
VPS50-219ENST00000495039 INAFM1C9JVW0 142 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 SPRY3O43610 288 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 TCEA1P23193 301 aaKnown RBP4.46□□□□□ -1.7
VPS50-219ENST00000495039 POLD3Q15054 466 aaPredicted RBP4.46□□□□□ -1.7
VPS50-219ENST00000495039 KIAA1755Q5JYT7 1200 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 ACSM6Q6P461 480 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 OR52N4Q8NGI2 321 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 LRTOMTQ8WZ04 291 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 OVCA2Q8WZ82 227 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 APIPQ96GX9 242 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 HES6Q96HZ4 224 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 KRTAP4-4Q9BYR3 166 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 FAM204AQ9H8W3 233 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 TBC1D23Q9NUY8 699 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 ZIM2Q9NZV7 527 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 TBC1D14Q9P2M4 693 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 FZD10Q9ULW2 581 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 EID1Q9Y6B2 187 aa4.46□□□□□ -1.7
VPS50-219ENST00000495039 BECN2A8MW95 431 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 FOXO6A8MYZ6 492 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 RGS14O43566 566 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 CCNT2O60583 730 aaKnown RBP4.45□□□□□ -1.7
VPS50-219ENST00000495039 PRSS2P07478 247 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 MYF5P13349 255 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 DSC1Q08554 894 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 FAM76BQ5HYJ3 339 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 TMEM196Q5HYL7 178 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 ABLIM2Q6H8Q1 611 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 CYB5R4Q7L1T6 521 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 RAVER1Q8IY67 606 aaKnown RBP4.45□□□□□ -1.7
VPS50-219ENST00000495039 GPR78Q96P69 363 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 CDH19Q9H159 772 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 ZBTB26Q9HCK0 441 aa4.45□□□□□ -1.7
VPS50-219ENST00000495039 A0A1B0GVT2 93 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 PPP1R3DO95685 299 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 RFPL3SP0C7P2 107 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 ARP10275 920 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 ARSBP15848 533 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 ATICP31939 592 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 COASYQ13057 564 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 GPS2Q13227 327 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 GPR18Q14330 331 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 PPP2R5AQ15172 486 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 NFE2Q16621 373 aaPredicted RBP4.44□□□□□ -1.7
VPS50-219ENST00000495039 OTUD1Q5VV17 481 aaPredicted RBP4.44□□□□□ -1.7
VPS50-219ENST00000495039 C9orf57Q5W0N0 161 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 TLDC1Q6P9B6 456 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 RNF44Q7L0R7 432 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 C16orf82Q7Z2V1 217 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 GPSM1Q86YR5 675 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 C1orf112Q9NSG2 853 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 KLHL42Q9P2K6 505 aa4.44□□□□□ -1.7
VPS50-219ENST00000495039 A0A0B4J293 547 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 MGEA5O60502 916 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 NFATC1O95644 943 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 UMODP07911 640 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 U2AF1L5P0DN76 240 aaPredicted RBP4.43□□□□□ -1.7
VPS50-219ENST00000495039 U2AF1Q01081 240 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS50-219ENST00000495039 POU3F1Q03052 451 aaPredicted RBP4.43□□□□□ -1.7
VPS50-219ENST00000495039 DDR1Q08345 913 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 KIF5AQ12840 1032 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 KRTAP24-1Q3LI83 254 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 ZNF718Q3SXZ3 478 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 RNF220Q5VTB9 566 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 CREB3L2Q70SY1 520 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 CADM3Q8N126 398 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 ABHD14AQ9BUJ0 271 aa4.43□□□□□ -1.7
VPS50-219ENST00000495039 PRDM16Q9HAZ2 1276 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms