RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 LUC7LQ9NQ29 371 aaKnown RBP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 KRT82Q9NSB4 513 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 C2orf42Q9NWW7 574 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 GTSE1Q9NYZ3 720 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 ADAMTS1Q9UHI8 967 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 DMGDHQ9UI17 866 aaKnown RBP12.72□□□□□ -0.37
UPF3A-210ENST00000493727 PTPRDP23468 1912 aa12.72□□□□□ -0.37
UPF3A-210ENST00000493727 HELZP42694 1942 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 FAM170AA1A519 330 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 DDX3XO00571 662 aaKnown RBP eCLIP12.71□□□□□ -0.373e-7■■■■□ 19.9
UPF3A-210ENST00000493727 NDUFA10O95299 355 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 LSM8O95777 96 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 HMGA1P17096 107 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 CHRNB2P17787 502 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 PMLP29590 882 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 HOXA6P31267 233 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 SCNN1AP37088 669 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 NSFP46459 744 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 SOX9P48436 509 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 BST2Q10589 180 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF268Q14587 947 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 MTF1Q14872 753 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 SLC18A3Q16572 532 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 CLEC16AQ2KHT3 1053 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 C11orf91Q3C1V1 193 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 CCDC122Q5T0U0 273 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 PPP1R2P3Q6NXS1 205 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 CC2D1AQ6P1N0 951 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 FAM171BQ6P995 826 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 TXNDC11Q6PKC3 985 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 RAD9BQ6WBX8 426 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 MON1AQ86VX9 555 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 LONP2Q86WA8 852 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 FUKQ8N0W3 1084 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 MAB21L3Q8N8X9 362 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 C1orf131Q8NDD1 294 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 UBA3Q8TBC4 463 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 TRMT2BQ96GJ1 504 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 SMARCD1Q96GM5 515 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 ZFYVE19Q96K21 471 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 LRRC3BQ96PB8 259 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 HNRNPABQ99729 332 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 ZSWIM1Q9BR11 485 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 B3GNT5Q9BYG0 378 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 ZNF518BQ9C0D4 1074 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 RBM12Q9NTZ6 932 aaKnown RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 TDP1Q9NUW8 608 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 TMLHEQ9NVH6 421 aa12.71□□□□□ -0.37
UPF3A-210ENST00000493727 EPN1Q9Y6I3 576 aaPredicted RBP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.71□□□□□ -0.37
UPF3A-210ENST00000493727 A0A087X0T9 212 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 TGFBR3LH3BV60 316 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 TM4SF5O14894 197 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 FOXD2O60548 495 aaPredicted RBP12.7□□□□□ -0.38
UPF3A-210ENST00000493727 FAM228BP0C875 321 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 SETSIPP0DME0 302 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 BDNFP23560 247 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 HOXC13P31276 330 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 LIMK1P53667 647 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 GRSF1Q12849 480 aaKnown RBP eCLIP12.7□□□□□ -0.38
UPF3A-210ENST00000493727 CCINQ13939 588 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 PON2Q15165 354 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 PDGFRLQ15198 375 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 CFAP221Q4G0U5 840 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 ALKBH5Q6P6C2 394 aaKnown RBP12.7□□□□□ -0.38
UPF3A-210ENST00000493727 BTLAQ7Z6A9 289 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 KIAA1328Q86T90 577 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 TMEM150AQ86TG1 271 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 TTC30AQ86WT1 665 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 SCN4BQ8IWT1 228 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 ANKRD52Q8NB46 1076 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
UPF3A-210ENST00000493727 MYRFLQ96LU7 910 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 CEP295NLQ96MC4 621 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 PCDHB18PQ96TA0 734 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 PKMYT1Q99640 499 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 DESI2Q9BSY9 194 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 SYT11Q9BT88 431 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 DUSP16Q9BY84 665 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 SYNCQ9H7C4 482 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 ST7Q9NRC1 585 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 GKN1Q9NS71 199 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 NAGPAQ9UK23 515 aa12.7□□□□□ -0.38
UPF3A-210ENST00000493727 MAGED2Q9UNF1 606 aaPredicted RBP12.7□□□□□ -0.38
UPF3A-210ENST00000493727 EIF3CLB5ME19 914 aaKnown RBP12.69□□□□□ -0.38
UPF3A-210ENST00000493727 ATG13O75143 517 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 CYP1A1P04798 512 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-210ENST00000493727 GRIK1P39086 918 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 MAGEA11P43364 429 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 MAP3K7CLP57077 242 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 NOMO3P69849 1222 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 KRT83P78385 493 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 SHC2P98077 582 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 INSM1Q01101 510 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-210ENST00000493727 TNK2Q07912 1038 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 RUNX3Q13761 415 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 NAA30Q147X3 362 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-210ENST00000493727 ASTE1Q2TB18 679 aaPredicted RBP12.69□□□□□ -0.38
UPF3A-210ENST00000493727 HS1BP3Q53T59 392 aa12.69□□□□□ -0.38
UPF3A-210ENST00000493727 C16orf46Q6P387 395 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms