RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ZKSCAN2Q63HK3 967 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 TTI2Q6NXR4 508 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 GALNTL5Q7Z4T8 443 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF808Q8N4W9 903 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 VMP1Q96GC9 406 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 WDYHV1Q96HA8 205 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 GNRHR2Q96P88 292 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 MPHOSPH9Q99550 1183 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 TEX101Q9BY14 249 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 AMBRA1Q9C0C7 1298 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 MSL2Q9HCI7 577 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 PDE7BQ9NP56 450 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 EHD2Q9NZN4 543 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF70Q9UC06 446 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 COPG1Q9Y678 874 aaKnown RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 FAM237BA0A1B0GVD1 139 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 LIPT2A6NK58 231 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 FESP07332 822 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ZNF37AP17032 561 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 MMP8P22894 467 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 IGHMBP2P38935 993 aaKnown RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GARSP41250 739 aaKnown RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ARHGAP8P85298 464 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 FOXL1Q12952 345 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 CDC37Q16543 378 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 DCAF17Q5H9S7 520 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ZNF648Q5T619 568 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 MTHFD1LQ6UB35 978 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 DPY19L3Q6ZPD9 716 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ULK2Q8IYT8 1036 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GABPB2Q8TAK5 448 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 XAGE5Q8WWM1 108 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 MIEF2Q96C03 454 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KLHL29Q96CT2 875 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 R3HDM4Q96D70 268 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KLHL15Q96M94 604 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 C5orf34Q96MH7 638 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 CLSTN3Q9BQT9 956 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 OR10A4Q9H209 315 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KAT14Q9H8E8 782 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GRPEL1Q9HAV7 217 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KCNE5Q9UJ90 142 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KCTD3Q9Y597 815 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PASKQ96RG2 1323 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 TEX13CA0A0J9YWL9 993 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GOLGA6L10A0A0M3HER8 536 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 A8MVJ9 347 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PDE8BO95263 885 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 HNF1BP35680 557 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 LIPAP38571 399 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 MVDP53602 400 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 EIF3BP55884 814 aaKnown RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PSMC6P62333 389 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PPP2CBP62714 309 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PPP2CAP67775 309 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 TLE3Q04726 772 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 DEUP1Q05D60 604 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GEN1Q17RS7 908 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 C1QL3Q5VWW1 255 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 WDR93Q6P2C0 686 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ACSM6Q6P461 480 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 GET4Q7L5D6 327 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 RRM2BQ7LG56 351 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 DNAJB7Q7Z6W7 309 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 CCDC105Q8IYK2 499 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 PLD5Q8N7P1 536 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ZNF713Q8N859 430 aaPredicted RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 CNOT9Q92600 299 aaKnown RBP5.02□□□□□ -1.61
VPS13A-212ENST00000493341 CMTM3Q96MX0 182 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ADPGKQ9BRR6 497 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 TRIM31Q9BZY9 425 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 SLC32A1Q9H598 525 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 EPHX3Q9H6B9 360 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ZWILCHQ9H900 591 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 SAP30LQ9HAJ7 183 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 KLQ9UEF7 1012 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 ZNF112Q9UJU3 913 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 OSGIN2Q9Y236 505 aa5.02□□□□□ -1.61
VPS13A-212ENST00000493341 SH2B2O14492 632 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 PER2O15055 1255 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 RPS6KA4O75676 772 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 SEC14L2O76054 403 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 METTL18O95568 372 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 ALDOAP04075 364 aaKnown RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 EIF2S1P05198 315 aaKnown RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 COX7A2P14406 83 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 CREB1P16220 341 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 CLCN2P51788 898 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 CXADRP78310 365 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 KRT83P78385 493 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 EFNB1P98172 346 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 GOLGA8DPQ0D2H9 430 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 ALKBH1Q13686 389 aaKnown RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 B3GNTL1Q67FW5 361 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 NUGGCQ68CJ6 796 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 FAM43BQ6ZT52 329 aaPredicted RBP5.01□□□□□ -1.61
VPS13A-212ENST00000493341 CHCHD4Q8N4Q1 142 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 RNF31Q96EP0 1072 aa5.01□□□□□ -1.61
VPS13A-212ENST00000493341 MNTQ99583 582 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms