RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 MAP9Q49MG5 647 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 MS4A13Q5J8X5 152 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 RWDD4Q6NW29 188 aaKnown RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 DARS2Q6PI48 645 aaKnown RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 ELMSAN1Q6PJG2 1045 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 GAREM2Q75VX8 874 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 PDZD4Q76G19 769 aaPredicted RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 ADGRD2Q7Z7M1 963 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 DDX42Q86XP3 938 aaKnown RBP eCLIP22.33■■□□□ 1.17
SMC4-221ENST00000489573 CDKL3Q8IVW4 592 aaPredicted RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 GSPT2Q8IYD1 628 aaKnown RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 TDHQ8IZJ6 230 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 CCDC89Q8N998 374 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 CCHCR1Q8TD31 782 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 HNRNPLLQ8WVV9 542 aaKnown RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 CORO1BQ9BR76 489 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 RNF38Q9H0F5 515 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 ASIC3Q9UHC3 531 aa22.33■■□□□ 1.17
SMC4-221ENST00000489573 MTCL1Q9Y4B5 1905 aaKnown RBP22.33■■□□□ 1.17
SMC4-221ENST00000489573 FGF10O15520 208 aaPredicted RBP22.33■■□□□ 1.16
SMC4-221ENST00000489573 RFPL2O75678 378 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 MAP3K6O95382 1288 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 HNRNPA1P09651 372 aaKnown RBP eCLIP22.33■■□□□ 1.16
SMC4-221ENST00000489573 MBL2P11226 248 aaPredicted RBP22.33■■□□□ 1.16
SMC4-221ENST00000489573 TRIP13Q15645 432 aaPredicted RBP22.33■■□□□ 1.16
SMC4-221ENST00000489573 RSAD2Q8WXG1 361 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 OLFM3Q96PB7 478 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 KLF16Q9BXK1 252 aaPredicted RBP22.33■■□□□ 1.16
SMC4-221ENST00000489573 CATSPERBQ9H7T0 1116 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 C10orf88Q9H8K7 445 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 SNX24Q9Y343 169 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 RAD54BQ9Y620 910 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 RANBP2P49792 3224 aaKnown RBP22.33■■□□□ 1.16
SMC4-221ENST00000489573 CLUHO75153 1309 aa22.33■■□□□ 1.16
SMC4-221ENST00000489573 CFAP69A5D8W1 941 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 FGF19O95750 216 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 OLFM2O95897 454 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 MYL4P12829 197 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 SERPINB6P35237 376 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 RPL21P46778 160 aaKnown RBP22.32■■□□□ 1.16
SMC4-221ENST00000489573 HARS2P49590 506 aaKnown RBP22.32■■□□□ 1.16
SMC4-221ENST00000489573 CYP4F8P98187 520 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 AUHQ13825 339 aaKnown RBP22.32■■□□□ 1.16
SMC4-221ENST00000489573 HLTFQ14527 1009 aaKnown RBP eCLIP22.32■■□□□ 1.165e-35■■■■■ 127.1
SMC4-221ENST00000489573 ARTNQ5T4W7 220 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 TXNDC8Q6A555 127 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 C14orf80Q86SX3 495 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 RBM23Q86U06 439 aaKnown RBP22.32■■□□□ 1.16
SMC4-221ENST00000489573 PCDH9Q9HC56 1237 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 ZDHHC7Q9NXF8 308 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 NFU1Q9UMS0 254 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 HCFC2Q9Y5Z7 792 aa22.32■■□□□ 1.16
SMC4-221ENST00000489573 OBSL1O75147 1896 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 BCLAF3A2AJT9 711 aaKnown RBP22.31■■□□□ 1.16
SMC4-221ENST00000489573 EPOPA6NHQ4 379 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 XYLBO75191 536 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 PTPN2P17706 415 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 STIP1P31948 543 aaKnown RBP22.31■■□□□ 1.16
SMC4-221ENST00000489573 EPHA5P54756 1037 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 RAP1GAP2Q684P5 730 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 LRRC31Q6UY01 552 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 ZNF683Q8IZ20 524 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP22.31■■□□□ 1.161e-8■■■■■ 268.2
SMC4-221ENST00000489573 QKIQ96PU8 341 aaKnown RBP eCLIP22.31■■□□□ 1.167e-7■■■■■ 232.7
SMC4-221ENST00000489573 ATXN3LQ9H3M9 355 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 TLE6Q9H808 572 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 ARFGAP3Q9NP61 516 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 ANAPC1Q9H1A4 1944 aa22.31■■□□□ 1.16
SMC4-221ENST00000489573 A0A1W2PRU2 124 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 HACD1B0YJ81 288 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 STC2O76061 302 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 IFNB1P01574 187 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 POU2F2P09086 479 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 SLC11A2P49281 568 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 VPS41P49754 854 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 GDF10P55107 478 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 PDK1Q15118 436 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 DUSP6Q16828 381 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 SLC45A4Q5BKX6 768 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 CHSY1Q86X52 802 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 NPWQ8N729 165 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 ARL14EPQ8N8R7 260 aaPredicted RBP22.3■■□□□ 1.16
SMC4-221ENST00000489573 GLIS1Q8NBF1 620 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 SLC22A12Q96S37 553 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 PRMT1Q99873 361 aaKnown RBP22.3■■□□□ 1.16
SMC4-221ENST00000489573 HCFC1R1Q9NWW0 138 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 GRHL1Q9NZI5 618 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 PPARGC1AQ9UBK2 798 aaKnown RBP22.3■■□□□ 1.16
SMC4-221ENST00000489573 VANGL2Q9ULK5 521 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 CEP290O15078 2479 aa22.3■■□□□ 1.16
SMC4-221ENST00000489573 SPDYE4A6NLX3 237 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 ACSL4O60488 711 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 ETS1P14921 441 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 PFKLP17858 780 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 HDCP19113 662 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 ECHS1P30084 290 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 HABP4Q5JVS0 413 aaKnown RBP22.29■■□□□ 1.16
SMC4-221ENST00000489573 NADSYN1Q6IA69 706 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 B4GALNT4Q76KP1 1039 aa22.29■■□□□ 1.16
SMC4-221ENST00000489573 PRUNE1Q86TP1 453 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms