RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ARMCX3Q9UH62 379 aaPredicted RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 KIAA1257Q9ULG3 409 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 LHX6Q9UPM6 363 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 LAMA5O15230 3695 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 TP53BP1Q12888 1972 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 FAM208BQ5VWN6 2430 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 M0QYV0 167 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 RNF225M0QZC1 329 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 FLRT2O43155 660 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 ACSL4O60488 711 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 SEMA4FO95754 770 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 CALCAP01258 141 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 LTFP02788 710 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 DNTTP04053 509 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 ATP5BP06576 529 aaKnown RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 BRD2P25440 801 aaKnown RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 AFF3P51826 1226 aaKnown RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 ZBTB16Q05516 673 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 KIF19Q2TAC6 998 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 NUGGCQ68CJ6 796 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 NADSYN1Q6IA69 706 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 LRSAM1Q6UWE0 723 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 LAYNQ6UX15 382 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 CCNI2Q6ZMN8 369 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 ENGASEQ8NFI3 743 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 BIRC7Q96CA5 298 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 MYEOVQ96EZ4 313 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 MYO19Q96H55 970 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 LMLNQ96KR4 655 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 MTG2Q9H4K7 406 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 TM9SF3Q9HD45 589 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 OSGEPQ9NPF4 335 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 BTBD3Q9Y2F9 522 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 PCDHB4Q9Y5E5 795 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 PCDHGB2Q9Y5G2 931 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 SNX11Q9Y5W9 270 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 PLXNA2O75051 1894 aa12.89□□□□□ -0.35
CPSF3-204ENST00000489403 NYNRINQ9P2P1 1898 aaKnown RBP12.89□□□□□ -0.35
CPSF3-204ENST00000489403 PMM2O15305 246 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 IRAK2O43187 625 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 POLR2EP19388 210 aaKnown RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 GRIA4P48058 902 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 SLC11A2P49281 568 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 TBX4P57082 545 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 CNGA2Q16280 664 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 ZNF776Q68DI1 518 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 MFN1Q8IWA4 741 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 UNC45BQ8IWX7 931 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 PPM1KQ8N3J5 372 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 SMARCE1Q969G3 411 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 NT5C1BQ96P26 610 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 ORAI3Q9BRQ5 295 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 IRX2Q9BZI1 471 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 SGK2Q9HBY8 427 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 METTL14Q9HCE5 456 aaKnown RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 KIAA1522Q9P206 1035 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 STIM2Q9P246 746 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 SUN2Q9UH99 717 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 INTS6Q9UL03 887 aaKnown RBP12.88□□□□□ -0.35
CPSF3-204ENST00000489403 ANKRD6Q9Y2G4 727 aa12.88□□□□□ -0.35
CPSF3-204ENST00000489403 DKK1O94907 266 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 FSBPO95073 299 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 SMC2O95347 1197 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 FYNP06241 537 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 ATXN1LP0C7T5 689 aaKnown RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 STILQ15468 1287 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 TEAD4Q15561 434 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 TTC31Q49AM3 519 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 ARHGEF19Q8IW93 802 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 ZNF557Q8N988 423 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 FIBINQ8TAL6 211 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 LMO3Q8TAP4 145 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 RHBDD1Q8TEB9 315 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 GOLGA1Q92805 767 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 AZIN2Q96A70 460 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 TTC17Q96AE7 1141 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 FCRL2Q96LA5 508 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 HSFY1Q96LI6 401 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 CEP63Q96MT8 703 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 MIS12Q9H081 205 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 NUCKS1Q9H1E3 243 aaKnown RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 RSPH9Q9H1X1 276 aaPredicted RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 CCDC86Q9H6F5 360 aaKnown RBP12.87□□□□□ -0.35
CPSF3-204ENST00000489403 ADAMTS20P59510 1910 aa12.87□□□□□ -0.35
CPSF3-204ENST00000489403 H0Y8X5 98 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 KCNK3O14649 394 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 PSMA7O14818 248 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 SIN3BO75182 1162 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 FBXO21O94952 628 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 IGHV4-34P06331 123 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CD44P16070 742 aaKnown RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CD27P26842 260 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CSKP41240 450 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 ST8SIA6P61647 398 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 RPS24P62847 133 aaKnown RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 COL9A2Q14055 689 aaPredicted RBP12.86□□□□□ -0.35
CPSF3-204ENST00000489403 CCDC40Q4G0X9 1142 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 FSCBQ5H9T9 825 aa12.86□□□□□ -0.35
CPSF3-204ENST00000489403 KCNT1Q5JUK3 1230 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms