RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 HERC6Q8IVU3 1022 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TP53INP2Q8IXH6 220 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CCDC33Q8N5R6 958 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 PDZD8Q8NEN9 1154 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 OR2W6PQ8NHA6 318 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TFB1MQ8WVM0 346 aaKnown RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 HTR3CQ8WXA8 447 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 C1orf74Q96LT6 269 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 RBM15Q96T37 977 aaKnown RBP eCLIP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 LGMNQ99538 433 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 PRDM12Q9H4Q4 367 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CCSER2Q9H7U1 834 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CYP4F11Q9HBI6 524 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 MARCH2Q9P0N8 246 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 HS3ST4Q9Y661 456 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TCRBV7S3A2A0A539 114 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 PPP1R12AO14974 1030 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 NCAM2O15394 837 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TEX28O15482 410 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 FGF10O15520 208 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TLR5O60602 858 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TTC4O95801 387 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CSH1P0DML2 217 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CSH2P0DML3 217 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 SERPINB6P35237 376 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 EIF3BP55884 814 aaKnown RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CBX1P83916 185 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 GAD2Q05329 585 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 RING1Q06587 406 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 GALNT2Q10471 571 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 CBLBQ13191 982 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 SLC29A2Q14542 456 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 TTMPQ5BVD1 217 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 DENND2CQ68D51 928 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 HEATR6Q6AI08 1181 aaKnown RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 PDZD4Q76G19 769 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 ZNF683Q8IZ20 524 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 KLHL23Q8NBE8 558 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 NETO2Q8NC67 525 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 PHOSPHO2Q8TCD6 241 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 RAD9AQ99638 391 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 SIK2Q9H0K1 926 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 DNAJC17Q9NVM6 304 aaKnown RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 NINJ2Q9NZG7 142 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 MAGED2Q9UNF1 606 aaPredicted RBP9.73□□□□□ -0.85
SF3B1-211ENST00000487698 INSL5Q9Y5Q6 135 aa9.73□□□□□ -0.85
SF3B1-211ENST00000487698 LAMA2P24043 3122 aaKnown RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 A0A0A0MRY4 1105 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 ZNF840PA6NDX5 716 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 E7ESA3 106 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 CHADO15335 359 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 ZNF189O75820 626 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 MOCS2O96007 188 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 APOEP02649 317 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 SHBGP04278 402 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 ACTN2P35609 894 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 MLLT6P55198 1093 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 BASP1P80723 227 aaKnown RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 PPIDQ08752 370 aaKnown RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 CEP85LQ5SZL2 805 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 KLHDC10Q6PID8 442 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 TAB3Q8N5C8 712 aaPredicted RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 CCDC110Q8TBZ0 833 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 DPF3Q92784 378 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 ARL8AQ96BM9 186 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 HDAC11Q96DB2 347 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 TBC1D31Q96DN5 1066 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 P2RY11Q96G91 374 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 SPATA13Q96N96 652 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 CDK5RAP1Q96SZ6 601 aaKnown RBP9.72□□□□□ -0.85
SF3B1-211ENST00000487698 ZBED2Q9BTP6 218 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 BRD8Q9H0E9 1235 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 LRRC4CQ9HCJ2 640 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 SSX2IPQ9Y2D8 614 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 SLC4A7Q9Y6M7 1214 aa9.72□□□□□ -0.85
SF3B1-211ENST00000487698 IGLV3-10A0A075B6K4 115 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 LCHNA4D1U4 455 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 WASH4PA8MWX3 477 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 GOLGA8KD6RF30 607 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 E9PAM4 449 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 RNF103O00237 685 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 CNPP09543 421 aaKnown RBP9.71□□□□□ -0.85
SF3B1-211ENST00000487698 SRGAP2BP0DMP2 458 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 ALDH1A3P47895 512 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 TUBP50607 506 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 WASHC5Q12768 1159 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 HIF1AQ16665 826 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 KYNUQ16719 465 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 MS4A13Q5J8X5 152 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 FAM182AQ5T1J6 154 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 C14orf80Q86SX3 495 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 MIB1Q86YT6 1006 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 ARHGAP12Q8IWW6 846 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 BTN2A3PQ96KV6 586 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 TMEM109Q9BVC6 243 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 TMBIM4Q9HC24 238 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 RAB6BQ9NRW1 208 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 HBS1LQ9Y450 684 aaKnown RBP9.71□□□□□ -0.85
SF3B1-211ENST00000487698 NR2E3Q9Y5X4 410 aa9.71□□□□□ -0.85
SF3B1-211ENST00000487698 SLC12A8A0AV02 714 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms