RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 CCDC47Q96A33 483 aaKnown RBP20.25■□□□□ 0.83
SMPDL3A-202ENST00000487215 IPO9Q96P70 1041 aaKnown RBP20.25■□□□□ 0.83
SMPDL3A-202ENST00000487215 MTG2Q9H4K7 406 aa20.25■□□□□ 0.83
SMPDL3A-202ENST00000487215 FTSJ1Q9UET6 329 aa20.25■□□□□ 0.83
SMPDL3A-202ENST00000487215 SUN2Q9UH99 717 aa20.25■□□□□ 0.83
SMPDL3A-202ENST00000487215 POLR2EP19388 210 aaKnown RBP20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 BST2Q10589 180 aaKnown RBP20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 DPYDQ12882 1025 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 SIX6OS1Q8N1H7 587 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 SNX21Q969T3 373 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 EEF2KMTQ96G04 330 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 SLC6A18Q96N87 628 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 RSPH9Q9H1X1 276 aaPredicted RBP20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 ABCC13Q9NSE7 274 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 HESX1Q9UBX0 185 aa20.24■□□□□ 0.83
SMPDL3A-202ENST00000487215 A0A1B0GTQ1 180 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 VILLO15195 856 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 TBL1XO60907 577 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 HSP90AA1P07900 732 aaKnown RBP20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 C21orf59P57076 290 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 RACK1P63244 317 aaKnown RBP20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 SGO2Q562F6 1265 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 MPP7Q5T2T1 576 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 PIK3R6Q5UE93 754 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 RFWD3Q6PCD5 774 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 USP30Q70CQ3 517 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 UBA3Q8TBC4 463 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 MYO19Q96H55 970 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 ACE2Q9BYF1 805 aaPredicted RBP20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 PABPC3Q9H361 631 aaKnown RBP20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 SERGEFQ9UGK8 458 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 NCKAP1Q9Y2A7 1128 aa20.23■□□□□ 0.83
SMPDL3A-202ENST00000487215 GOLGA6L7A0A1B0GV03 622 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 A0A1W2PPC4 97 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 FAM47DPA6NHR8 397 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 EIF4E1BA6NMX2 242 aaKnown RBP20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 E9PAM4 449 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 DFNA5O60443 496 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 STX10O60499 249 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 IGLV3-27P01718 113 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 CD19P15391 556 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 SLC6A4P31645 630 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 SYKP43405 635 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 DAOAP59103 153 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 EDRF1Q3B7T1 1238 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 CBWD6Q4V339 395 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 FAM133BQ5BKY9 247 aaKnown RBP20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 CBWD3Q5JTY5 395 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 CBWD5Q5RIA9 395 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 MSANTD2Q6P1R3 559 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 TMPRSS12Q86WS5 348 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 GATAD2AQ86YP4 633 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 GANCQ8TET4 914 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 KCTD13Q8WZ19 329 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 LMLNQ96KR4 655 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 DCBLD2Q96PD2 775 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 CNGB3Q9NQW8 809 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 FBXL12Q9NXK8 326 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 SCML1Q9UN30 329 aa20.22■□□□□ 0.83
SMPDL3A-202ENST00000487215 PLK4O00444 970 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 SIN3BO75182 1162 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 LCP1P13796 627 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 NDUFA8P51970 172 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 GALCP54803 685 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 CUL2Q13617 745 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 PRAMEF14Q5SWL7 426 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 MFN1Q8IWA4 741 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 HSCBQ8IWL3 235 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 SCML4Q8N228 414 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 ELF4Q99607 663 aaPredicted RBP20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 IRX2Q9BZI1 471 aaPredicted RBP20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 EBF2Q9HAK2 575 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 PCDHGA1Q9Y5H4 931 aa20.21■□□□□ 0.83
SMPDL3A-202ENST00000487215 COL5A1P20908 1838 aaPredicted RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 URB1O60287 2271 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 PLXNA2O75051 1894 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 FAM237AA0A1B0GTK4 181 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 CBX4O00257 560 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 O00370 1275 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 IRAK2O43187 625 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 WNT1P04628 370 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 SETSIPP0DME0 302 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 EPB41P11171 864 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 ABCG1P45844 678 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 SLC11A2P49281 568 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 CLDN6P56747 220 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 ST8SIA6P61647 398 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 SHBQ15464 509 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 HNRNPA1L2Q32P51 320 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 PKDCCQ504Y2 493 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 NCEH1Q6PIU2 408 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 DHX40Q8IX18 779 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 ZNF557Q8N988 423 aaPredicted RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 TTC17Q96AE7 1141 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 MRGPRX3Q96LB0 322 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 PRICKLE1Q96MT3 831 aaPredicted RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 STIM2Q9P246 746 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 INTS6Q9UL03 887 aaKnown RBP20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 CABIN1Q9Y6J0 2220 aa20.2■□□□□ 0.82
SMPDL3A-202ENST00000487215 KNL1Q8NG31 2342 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms