RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 AKIP1Q9NQ31 210 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 PI4KBQ9UBF8 816 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 NKX1-2Q9UD57 310 aaPredicted RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 AASSQ9UDR5 926 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 STEAP1Q9UHE8 339 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 STRCP1A6NGW2 1772 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 POLR3AO14802 1390 aaPredicted RBP4.49□□□□□ -1.69
PTCD3-216ENST00000487043 NSD2O96028 1365 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 TMEM94Q12767 1356 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 USP32Q8NFA0 1604 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 FMN2Q9NZ56 1722 aa4.49□□□□□ -1.69
PTCD3-216ENST00000487043 CDC42BPGQ6DT37 1551 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 A1L4Q6 167 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 SLC38A8A6NNN8 435 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 PATE3B3GLJ2 98 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 M0QYT0 321 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 NDUFA10O95299 355 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 CYP21A2P08686 494 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 CNPP09543 421 aaKnown RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 PEPDP12955 493 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 THBS4P35443 961 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 ATXN1P54253 815 aaKnown RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 CASP6P55212 293 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 MTAPQ13126 283 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 PDE1CQ14123 709 aaPredicted RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 CDSNQ15517 529 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 LRRC24Q50LG9 513 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 RABL3Q5HYI8 236 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 ANKRD40Q6AI12 368 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 SP5Q6BEB4 398 aaPredicted RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 DGAT2L7PQ6IED9 249 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 CCDC144NLQ6NUI1 221 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 DSTYKQ6XUX3 929 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 RINLQ6ZS11 566 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 P3H2Q8IVL5 708 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 TSPYL6Q8N831 410 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 NGDNQ8NEJ9 315 aaKnown RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 R3HDM4Q96D70 268 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 ZBTB10Q96DT7 871 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 BARD1Q99728 777 aaKnown RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF747Q9BV97 191 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 ABHD16BQ9H3Z7 469 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 SLITRK6Q9H5Y7 841 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 PLEKHA2Q9HB19 425 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 OLA1Q9NTK5 396 aaKnown RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 TMEM74BQ9NUR3 256 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 FBXO28Q9NVF7 368 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 BAG5Q9UL15 447 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 AFG3L2Q9Y4W6 797 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 NALCNQ8IZF0 1738 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 BRD4O60885 1362 aaPredicted RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 TOPAZ1Q8N9V7 1692 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 RGPD8O14715 1765 aaPredicted RBP4.48□□□□□ -1.69
PTCD3-216ENST00000487043 AKAP12Q02952 1782 aa4.48□□□□□ -1.69
PTCD3-216ENST00000487043 TTC21BQ7Z4L5 1316 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF335Q9H4Z2 1342 aaPredicted RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 DCCP43146 1447 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 EDC4Q6P2E9 1401 aaKnown RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 SSH2Q76I76 1423 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 LRRC7Q96NW7 1537 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ITSN1Q15811 1721 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 VWA3AA6NCI4 1184 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 PSMD9O00233 223 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 KLK10O43240 276 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CTIFO43310 598 aaKnown RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CDKL5O76039 1030 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ALADP13716 330 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 LIPAP38571 399 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 MCM2P49736 904 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CDK7P50613 346 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CLCN2P51788 898 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 KHDRBS1Q07666 443 aaKnown RBP eCLIP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 SEMA3BQ13214 749 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 KRT32Q14532 448 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 KCTD2Q14681 263 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 TOMM20Q15388 145 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 HS1BP3Q53T59 392 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ZNF484Q5JVG2 852 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ACAD10Q6JQN1 1059 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 MAVSQ7Z434 540 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 DTX2Q86UW9 622 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 LRRC71Q8N4P6 559 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CCDC89Q8N998 374 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 FAM71DQ8N9W8 422 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 FSIP1Q8NA03 581 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 CPEB3Q8NE35 698 aaKnown RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 LINS1Q8NG48 757 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 XAGE5Q8WWM1 108 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 LPIN2Q92539 896 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 KTI12Q96EK9 354 aaPredicted RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 RBM17Q96I25 401 aaKnown RBP4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ADOQ96SZ5 270 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 AGXT2Q9BYV1 514 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ACAD9Q9H845 621 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 PLEKHA5Q9HAU0 1116 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 RAB21Q9UL25 225 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 TBX20Q9UMR3 447 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 ZBTB1Q9Y2K1 713 aa4.47□□□□□ -1.69
PTCD3-216ENST00000487043 TCAF1Q9Y4C2 921 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms