RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRELID2Q8N945 189 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 EDEM1Q92611 657 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 SEPHS2Q99611 448 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 IDI2Q9BXS1 227 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 TMCC3Q9ULS5 477 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 DRD4P21917 467 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 RFX3P48380 749 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PLEKHH3Q7Z736 793 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 NT5DC4Q86YG4 428 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF839A8K0R7 811 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF286BP0CG31 522 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PAX7P23759 505 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 GTF2A2P52657 109 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PAN2Q504Q3 1202 aaKnown RBP16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CRELD2Q6UXH1 353 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-210ENST00000487017 ALLCQ8N6M5 410 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 MAML3Q96JK9 1138 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 TBL1YQ9BQ87 522 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 XPNPEP3Q9NQH7 507 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 RGL2O15211 777 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PSMD10O75832 226 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 PREPLQ4J6C6 727 aaPredicted RBP16.8■□□□□ 0.28
COL7A1-210ENST00000487017 ZNF470Q6ECI4 717 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 DEFB106AQ8N104 65 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 CARNMT1Q8N4J0 409 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 FAM192AQ9GZU8 254 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 MYRFQ9Y2G1 1151 aa16.8■□□□□ 0.28
COL7A1-210ENST00000487017 E5RJQ4 531 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 H3BRB1 525 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 CTXN3Q4LDR2 81 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ACOX2Q99424 681 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 APBA2Q99767 749 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 TUT1Q9H6E5 874 aaKnown RBP16.79■□□□□ 0.28
COL7A1-210ENST00000487017 RAD18Q9NS91 495 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 SORCS3Q9UPU3 1222 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 CNTNAP2Q9UHC6 1331 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 H0YC42 278 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 TBC1D12O60347 775 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 VAPBO95292 243 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 PBX1P40424 430 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 RHOAP61586 193 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 NBPF12Q5TAG4 269 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-210ENST00000487017 SPATC1LQ9H0A9 340 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 MID1IP1Q9NPA3 183 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 SYBUQ9NX95 663 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 SIGLEC16A6NMB1 481 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 TPP1O14773 563 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ADRB2P07550 413 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 SLC2A4P14672 509 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DNAJB2P25686 324 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ALDH7A1P49419 539 aaKnown RBP16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ANXA11P50995 505 aaKnown RBP16.79■□□□□ 0.28
COL7A1-210ENST00000487017 GTF2BQ00403 316 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 FBXO39Q8N4B4 442 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 RNF148Q8N7C7 305 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ATG16L2Q8NAA4 619 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 REPS2Q8NFH8 660 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 ELOVL6Q9H5J4 265 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 RGS18Q9NS28 235 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 A0A1B0GW55 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L2P0CJ85 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L3P0CJ86 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L4P0CJ87 422 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L5P0CJ88 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L6P0CJ89 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4L7P0CJ90 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 MBL2P11226 248 aaPredicted RBP16.79■□□□□ 0.28
COL7A1-210ENST00000487017 IL5RAQ01344 420 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 TMC7Q7Z402 723 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 RERGLQ9H628 205 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 DUX4Q9UBX2 424 aa16.79■□□□□ 0.28
COL7A1-210ENST00000487017 C2CD2LO14523 706 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 INPP4BO15327 924 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 IFNA14P01570 189 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 CDC16Q13042 620 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 APOBEC3HQ6NTF7 200 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SLC27A1Q6PCB7 646 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 UTP6Q9NYH9 597 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SYNPO2Q9UMS6 1093 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 MGAT4DA6NG13 374 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 KCNK1O00180 336 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 BCL9O00512 1426 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 CLOCKO15516 846 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 VEGFAP15692 232 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 RENBPP51606 427 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 MAD2L1Q13257 205 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 TRIP4Q15650 581 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 GRIK4Q16099 956 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 NET1Q7Z628 596 aaPredicted RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 LUZP2Q86TE4 346 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 LZTR1Q8N653 840 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 FIG4Q92562 907 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 SEMA4DQ92854 862 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 VAT1Q99536 393 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 DPY30Q9C005 99 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 POMKQ9H5K3 350 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 PRDM16Q9HAZ2 1276 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 REXO2Q9Y3B8 237 aaKnown RBP16.78■□□□□ 0.28
COL7A1-210ENST00000487017 LDLRP01130 860 aa16.78■□□□□ 0.28
COL7A1-210ENST00000487017 TSHRP16473 764 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms