RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 ARCQ7LC44 396 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 MFN1Q8IWA4 741 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 CARNMT1Q8N4J0 409 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 IL17RCQ8NAC3 791 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 WFDC5Q8TCV5 224 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SYN2Q92777 582 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 NT5C3BQ969T7 300 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SLC2A11Q9BYW1 496 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 TRIM5Q9C035 493 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 TKTL2Q9H0I9 626 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SIK2Q9H0K1 926 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 WDCPQ9H6R7 721 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 RAB23Q9ULC3 237 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 MMP17Q9ULZ9 603 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 SLC27A6Q9Y2P4 619 aa15.28■□□□□ 0.04
USP4-212ENST00000486549 PTPRZ1P23471 2315 aaPredicted RBP15.28■□□□□ 0.04
USP4-212ENST00000486549 USP34Q70CQ2 3546 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 ANKRD62A6NC57 917 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 C2CD4BA6NLJ0 364 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 SGK1O00141 431 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 AP5Z1O43299 807 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 PAGE1O75459 146 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 F9P00740 461 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CHRM1P11229 460 aaPredicted RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 GPD1P21695 349 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CNR2P34972 360 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 RDXP35241 583 aaKnown RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 RFC1P35251 1148 aaPredicted RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 FNTBP49356 437 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CXCR3P49682 368 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CCDC14Q49A88 953 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 RAB6CQ53S08 254 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 BRMS1LQ5PSV4 323 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 SH3PXD2AQ5TCZ1 1133 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 VPS36Q86VN1 386 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CIR1Q86X95 450 aaPredicted RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 FAM131BQ86XD5 332 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 GAS2L3Q86XJ1 694 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 CCDC117Q8IWD4 279 aaPredicted RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 ERLEC1Q96DZ1 483 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 PGAP3Q96FM1 320 aaPredicted RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 MCEEQ96PE7 176 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 PRMT1Q99873 361 aaKnown RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 CIPCQ9C0C6 399 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 RAB6CQ9H0N0 254 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 ANLNQ9NQW6 1124 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 TMPRSS4Q9NRS4 437 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 ABCB8Q9NUT2 735 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 HCN2Q9UL51 889 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 VANGL2Q9ULK5 521 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 PAXBP1Q9Y5B6 917 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 HS3ST4Q9Y661 456 aa15.27■□□□□ 0.04
USP4-212ENST00000486549 BZW2Q9Y6E2 419 aaKnown RBP15.27■□□□□ 0.04
USP4-212ENST00000486549 SIGLEC16A6NMB1 481 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 LILRB5O75023 590 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 FTLP02792 175 aaPredicted RBP15.26■□□□□ 0.03
USP4-212ENST00000486549 TPM1P09493 284 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 GZMAP12544 262 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 HLA-FP30511 346 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 HOXA6P31267 233 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 CD70P32970 193 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 CDH18Q13634 790 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 EOGTQ5NDL2 527 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 RABGAP1LQ5R372 815 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 MPP7Q5T2T1 576 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 DCUN1D2Q6PH85 259 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 WDR59Q6PJI9 974 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 SARM1Q6SZW1 724 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 CHST9Q7L1S5 443 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 TMC6Q7Z403 805 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 TRMT11Q7Z4G4 463 aaKnown RBP15.26■□□□□ 0.03
USP4-212ENST00000486549 CHPFQ8IZ52 775 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 TSTD1Q8NFU3 115 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 FAM172AQ8WUF8 416 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 ZNF653Q96CK0 615 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 RPRD1AQ96P16 312 aaPredicted RBP15.26■□□□□ 0.03
USP4-212ENST00000486549 ACOX2Q99424 681 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 IRX2Q9BZI1 471 aaPredicted RBP15.26■□□□□ 0.03
USP4-212ENST00000486549 EPC1Q9H2F5 836 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 ARHGEF38Q9NXL2 777 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 ADAMTS1Q9UHI8 967 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 GGA2Q9UJY4 613 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 SNX10Q9Y5X0 201 aa15.26■□□□□ 0.03
USP4-212ENST00000486549 RIF1Q5UIP0 2472 aaKnown RBP15.26■□□□□ 0.03
USP4-212ENST00000486549 FAM186AA6NE01 2351 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 TCRBV5S1A1TA0A578 114 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 H0Y626 953 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 I6L893 689 aaPredicted RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 ADAM23O75077 832 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 RTN2O75298 545 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 LUC7L3O95232 432 aaKnown RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 PABPC1P11940 636 aaKnown RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 PTPN9P43378 593 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 RPL7AP62424 266 aaKnown RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 MTA1Q13330 715 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 AUHQ13825 339 aaKnown RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 HSF5Q4G112 596 aaPredicted RBP15.25■□□□□ 0.03
USP4-212ENST00000486549 FBXL22Q6P050 247 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 TMEM92Q6UXU6 159 aa15.25■□□□□ 0.03
USP4-212ENST00000486549 BNIPLQ7Z465 357 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms