RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 FBXO44Q9H4M3 255 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 SYNDIG1Q9H7V2 258 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 GOLGA2P5Q9HBQ8 144 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 EML4Q9HC35 981 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 COG5Q9UP83 839 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 STARD13Q9Y3M8 1113 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 STX7O15400 261 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 LIASO43766 372 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ESRRBO95718 433 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 RALBP11234 206 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 DARSP14868 501 aaKnown RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 PCBP1Q15365 356 aaKnown RBP eCLIP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 RBBP7Q16576 425 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 ZRANB3Q5FWF4 1079 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TIGD7Q6NT04 549 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC43Q8N309 656 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TKTL2Q9H0I9 626 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 SIX2Q9NPC8 291 aa11.3□□□□□ -0.6
HDAC6-228ENST00000486227 AHDC1Q5TGY3 1603 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-228ENST00000486227 TMEM191CA6NGB0 347 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 RNASEH1O60930 286 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 STMN1P16949 149 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PTDSS1P48651 473 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 NR2C2P49116 596 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TUBP50607 506 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 KPNA1P52294 538 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PARP6Q2NL67 630 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 ZCCHC9Q8N567 271 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 C1orf127Q8N9H9 656 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PWWP2AQ96N64 755 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CDK5RAP1Q96SZ6 601 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 MRPL45Q9BRJ2 306 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TLR8Q9NR97 1041 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 AJAP1Q9UKB5 411 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 DTNAQ9Y4J8 743 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 USP12O75317 370 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CBX6O95503 412 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TRUB2O95900 331 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TBX4P57082 545 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 ADRM1Q16186 407 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PKN2Q16513 984 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CES3Q6UWW8 571 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 LRRC52Q8N7C0 313 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 LENG1Q96BZ8 264 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 SHCBP1LQ9BZQ2 653 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 THG1LQ9NWX6 298 aaKnown RBP11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TUBGCP4Q9UGJ1 667 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 VANGL2Q9ULK5 521 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 C5orf60A6NFR6 353 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CLDN5O00501 218 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 TREHO43280 583 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 GLRA3O75311 464 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 GLRBP48167 497 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PCYT1AP49585 367 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 SP2Q02086 613 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 POU6F1Q14863 301 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 SLC45A4Q5BKX6 768 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 PPM1LQ5SGD2 360 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 FOPNLQ96NB1 174 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 ERVK-5Q9HDB9 667 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CHST12Q9NRB3 414 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 ACTL7BQ9Y614 415 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 NUP188Q5SRE5 1749 aa11.29□□□□□ -0.6
HDAC6-228ENST00000486227 CHRM3P20309 590 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MGAT1P26572 445 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 HSPA13P48723 471 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MGAT5Q09328 741 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SYTL3Q4VX76 610 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 ZC3H12AQ5D1E8 599 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 PTRHD1Q6GMV3 140 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 ANGPTL8Q6UXH0 198 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 FIBCD1Q8N539 461 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SNX19Q92543 992 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 USP13Q92995 863 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 FAM136AQ96C01 138 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CPXM1Q96SM3 734 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 TBC1D10AQ9BXI6 508 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 IGFLR1Q9H665 355 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 CTNNAL1Q9UBT7 734 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SMIM35A0A1B0GVV1 85 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 TM9SF1O15321 606 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 TIMM44O43615 452 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 RPL22P35268 128 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 COPAP53621 1224 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MPP3Q13368 585 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 RASA2Q15283 850 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 TMPRSS6Q8IU80 811 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 LRRN4Q8WUT4 740 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SNRNP27Q8WVK2 155 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 RNF157Q96PX1 679 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 TMEM120AQ9BXJ8 343 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MAF1Q9H063 256 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 MRPL46Q9H2W6 279 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 SLC13A4Q9UKG4 626 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 hCG_1818297A0A087WSY0 165 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 WDR27A2RRH5 827 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 DDX3YO15523 660 aaKnown RBP11.28□□□□□ -0.6
HDAC6-228ENST00000486227 RHOBTB1O94844 696 aa11.28□□□□□ -0.6
HDAC6-228ENST00000486227 PYGLP06737 847 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms