RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 ANKS1BQ7Z6G8 1248 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 PHLDB2Q86SQ0 1253 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 TAC4Q86UU9 113 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 CNGA4Q8IV77 575 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 MFN1Q8IWA4 741 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 CHPFQ8IZ52 775 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ADGRG2Q8IZP9 1017 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 LGI2Q8N0V4 545 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 TMEM105Q8N8V8 129 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 HJURPQ8NCD3 748 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 TSTD1Q8NFU3 115 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 SLC30A5Q8TAD4 765 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 BTN2A3PQ96KV6 586 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 NAP1L5Q96NT1 182 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 RPRD1AQ96P16 312 aaPredicted RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 CDK15Q96Q40 435 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 NAA15Q9BXJ9 866 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 HAUS4Q9H6D7 363 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 MRPL47Q9HD33 250 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 RBM12Q9NTZ6 932 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 MYO1AQ9UBC5 1043 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 AGO1Q9UL18 857 aaKnown RBP8.34□□□□□ -1.07
USP40-216ENST00000485943 PLA2G4CQ9UP65 541 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 SCINQ9Y6U3 715 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 VCANP13611 3396 aa8.34□□□□□ -1.07
USP40-216ENST00000485943 ERVH48-1M5A8F1 160 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 EPHB6O15197 1021 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 SIAH2O43255 324 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 DAPK3O43293 454 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 PI15O43692 258 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 EGFP01133 1207 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 SERPING1P05155 500 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 ACADMP11310 421 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 PDGFRAP16234 1089 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 POLR2EP19388 210 aaKnown RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 RDXP35241 583 aaKnown RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 MATKP42679 507 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 OXCT1P55809 520 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 JAM2P57087 298 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 RAB15P59190 212 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 NOMO3P69849 1222 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 FMO1Q01740 532 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 RING1Q06587 406 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 NR1I3Q14994 352 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 CLEC16AQ2KHT3 1053 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 PTPN20Q4JDL3 420 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 FNDC3BQ53EP0 1204 aaKnown RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 ZC3H12AQ5D1E8 599 aaKnown RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 FIGNQ5HY92 759 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 ACBD5Q5T8D3 534 aaPredicted RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 TTC39BQ5VTQ0 682 aaPredicted RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 RAP1GAP2Q684P5 730 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 RWDD4Q6NW29 188 aaKnown RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 PRR23BQ6ZRT6 265 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 SLC26A9Q7LBE3 791 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 TMEM25Q86YD3 366 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 SPEM1Q8N4L4 309 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 PAF1Q8N7H5 531 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 ZNF513Q8N8E2 541 aaPredicted RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 ZNF653Q96CK0 615 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 CHFRQ96EP1 664 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 SPACA7Q96KW9 195 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 CCDC42Q96M95 316 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 LRRC3BQ96PB8 259 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 CHRDQ9H2X0 955 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 PARVAQ9NVD7 372 aa8.33□□□□□ -1.08
USP40-216ENST00000485943 MTF2Q9Y483 593 aaPredicted RBP8.33□□□□□ -1.08
USP40-216ENST00000485943 ITIH6Q6UXX5 1313 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 BDP1A6H8Y1 2624 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 A0A1W2PQJ5 194 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 AKR1B15C9JRZ8 316 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 HOXC11O43248 304 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 SRGAP2O75044 1071 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 RTN2O75298 545 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TULP3O75386 442 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 KLF8O95600 359 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 MYBL1P10243 752 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 SKILP12757 684 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 GPD1P21695 349 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 PSMA2P25787 234 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 CASP14P31944 242 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 SCNN1AP37088 669 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TNFRSF4P43489 277 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 DGKEP52429 567 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 MRPS21P82921 87 aaKnown RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 MTAPQ13126 283 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 ZNF177Q13360 481 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 BYSLQ13895 437 aaKnown RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 HSF5Q4G112 596 aaPredicted RBP8.32□□□□□ -1.08
USP40-216ENST00000485943 C2CD6Q53TS8 623 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TMEM196Q5HYL7 178 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 EFHC2Q5JST6 749 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 BRMS1LQ5PSV4 323 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 ACAD10Q6JQN1 1059 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 RFWD3Q6PCD5 774 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 RHBDF2Q6PJF5 856 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 TXNDC11Q6PKC3 985 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 OLFML1Q6UWY5 402 aa8.32□□□□□ -1.08
USP40-216ENST00000485943 SERPINA13PQ6UXR4 307 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms