RNA–Protein interactions for RNA: ENST00000473376.1

CHD3-209, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 562 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-209ENST00000473376 SH3BP5O60239 455 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 TSPAN3O60637 253 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 GABBR2O75899 941 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 DKK1O94907 266 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 FGFR1OPO95684 399 aaKnown RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 DNTTP04053 509 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 LCP1P13796 627 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 POLR2EP19388 210 aaKnown RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 MAOBP27338 520 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 GPD2P43304 727 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 GRIA4P48058 902 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 TBX4P57082 545 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 TEAD4Q15561 434 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 CCDC40Q4G0X9 1142 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 FNDC3BQ53EP0 1204 aaKnown RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 CCDC117Q8IWD4 279 aaPredicted RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 TRIM59Q8IWR1 403 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 ZCCHC9Q8N567 271 aaKnown RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 EHBP1Q8NDI1 1231 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 SORCS1Q8WY21 1168 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 SLC39A13Q96H72 371 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 ZSWIM1Q9BR11 485 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 RSPH9Q9H1X1 276 aaPredicted RBP14.07□□□□□ -0.16
CHD3-209ENST00000473376 PRSS16Q9NQE7 514 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 FSCN3Q9NQT6 498 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 TMEM51Q9NW97 253 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 PCOLCE2Q9UKZ9 415 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 ZFHX4Q86UP3 3567 aa14.07□□□□□ -0.16
CHD3-209ENST00000473376 TARSL2A2RTX5 802 aaKnown RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 M0QYV0 167 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 RNF225M0QZC1 329 aaPredicted RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 PAPSS1O43252 624 aaPredicted RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 MED7O43513 233 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 PCDHGA12O60330 932 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 TOP3BO95985 862 aaKnown RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 CAPNS1P04632 268 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 SRPRAP08240 638 aaKnown RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 CD27P26842 260 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 VASPP50552 380 aaPredicted RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 SLC12A1Q13621 1099 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 HLA-BQ31612 363 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 HNRNPA1L2Q32P51 320 aaKnown RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 ZNF776Q68DI1 518 aaPredicted RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 TMEM110Q86TL2 294 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 BAHD1Q8TBE0 780 aaPredicted RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 MED15Q96RN5 788 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 SLC4A5Q9BY07 1137 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 GAREM1Q9H706 876 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 TM7SF3Q9NS93 570 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 EIF2B4Q9UI10 523 aaKnown RBP14.06□□□□□ -0.16
CHD3-209ENST00000473376 KLK13Q9UKR3 277 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 NCKAP1Q9Y2A7 1128 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 FAM208BQ5VWN6 2430 aa14.06□□□□□ -0.16
CHD3-209ENST00000473376 SRRM3A6NNA2 597 aaPredicted RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 C10orf142B7Z368 130 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 PPP1R3GB7ZBB8 358 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 MSI1O43347 362 aaKnown RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 TBL1XO60907 577 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 RNASEH1O60930 286 aaKnown RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 SEMA4FO95754 770 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 FYNP06241 537 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 SPINK2P20155 84 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 ACSL1P33121 698 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 OXCT1P55809 520 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 ST8SIA6P61647 398 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 RPS14P62263 151 aaKnown RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 FAM193AP78312 1265 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 KCNH2Q12809 1159 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 LRMPQ12912 555 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 EIF4EBP2Q13542 120 aaPredicted RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 MORC3Q14149 939 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 MS4A13Q5J8X5 152 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 CCNI2Q6ZMN8 369 aaPredicted RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 MFN1Q8IWA4 741 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 ZCCHC14Q8WYQ9 949 aaKnown RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 IGSF8Q969P0 613 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 FCRL2Q96LA5 508 aaPredicted RBP14.05□□□□□ -0.16
CHD3-209ENST00000473376 PPP1R9BQ96SB3 815 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 MIR1-1HGQ9H1L0 117 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 DKK4Q9UBT3 224 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 ADAMTS1Q9UHI8 967 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 MAN1B1Q9UKM7 699 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 FZD4Q9ULV1 537 aa14.05□□□□□ -0.16
CHD3-209ENST00000473376 MOCS3O95396 460 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 GLI1P08151 1106 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 FTH1P19P0C7X4 201 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 SLC2A3P11169 496 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 HLA-EP13747 358 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 CD44P16070 742 aaKnown RBP14.04□□□□□ -0.16
CHD3-209ENST00000473376 SLC6A4P31645 630 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 CD70P32970 193 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 RGS7P49802 495 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 RACK1P63244 317 aaKnown RBP14.04□□□□□ -0.16
CHD3-209ENST00000473376 BNC1Q01954 994 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 TTC39BQ5VTQ0 682 aaPredicted RBP14.04□□□□□ -0.16
CHD3-209ENST00000473376 CHCHD4Q8N4Q1 142 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 OR2I1PQ8NGU4 316 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 DQX1Q8TE96 717 aaKnown RBP14.04□□□□□ -0.16
CHD3-209ENST00000473376 CYB5D2Q8WUJ1 264 aa14.04□□□□□ -0.16
CHD3-209ENST00000473376 NELFBQ8WX92 580 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms