RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GTPBP2Q9BX10 602 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 POPDC2Q9HBU9 364 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 DNAJC12Q9UKB3 198 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 TLR6Q9Y2C9 796 aa16.32■□□□□ 0.2
CCDC88B-205ENST00000472524 SPAARA0A1B0GVQ0 90 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 TYW5A2RUC4 315 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 IRAK2O43187 625 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 CD70P32970 193 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 HOXD12P35452 270 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 DPP6P42658 865 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 NNTQ13423 1086 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 VWA3BQ502W6 1294 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 MBLAC2Q68D91 279 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 PIP4P1Q86T03 277 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 TMPRSS6Q8IU80 811 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 MFN1Q8IWA4 741 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 KDF1Q8NAX2 398 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 HJURPQ8NCD3 748 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 OR2I1PQ8NGU4 316 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 AZIN2Q96A70 460 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 MYEOVQ96EZ4 313 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 SIPA1Q96FS4 1042 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC39A13Q96H72 371 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 TUBGCP2Q9BSJ2 902 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 NUCKS1Q9H1E3 243 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 NDST4Q9H3R1 872 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC6A14Q9UN76 642 aa16.31■□□□□ 0.2
CCDC88B-205ENST00000472524 HYAL3O43820 417 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 APOEP02649 317 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 POLR2EP19388 210 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 ERCC5P28715 1186 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CD6P30203 668 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 COPAP53621 1224 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 RPS24P62847 133 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 YWHAZP63104 245 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PITX1P78337 314 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PTK2Q05397 1052 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 GFPT1Q06210 699 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 SEMA3BQ13214 749 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 TAF5Q15542 800 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 DUOXA1Q1HG43 343 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 ZC3H12AQ5D1E8 599 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 MIIPQ5JXC2 388 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 MPP7Q5T2T1 576 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 BEND5Q7L4P6 421 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 ADIPOR2Q86V24 386 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 RGL4Q8IZJ4 473 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CFAP52Q8N1V2 620 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CARNMT1Q8N4J0 409 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 WDTC1Q8N5D0 677 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 C1orf131Q8NDD1 294 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CEP76Q8TAP6 659 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PRCCQ92733 491 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 GATA6Q92908 595 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 TOE1Q96GM8 510 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PPP1R13BQ96KQ4 1090 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CPXM1Q96SM3 734 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC32A1Q9H598 525 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 CAPN10Q9HC96 672 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 LMBRD1Q9NUN5 540 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 USP36Q9P275 1121 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 XPO7Q9UIA9 1087 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PCDHGC3Q9UN70 934 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 PLA2G4CQ9UP65 541 aa16.3■□□□□ 0.2
CCDC88B-205ENST00000472524 TP53BP1Q12888 1972 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 SYNJ2BP-COX16A0A087WUM0 186 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 KCNJ18B7U540 433 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 FOXN3O00409 490 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 GRAP2O75791 330 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 TRUB2O95900 331 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 SERPINF2P08697 491 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 ACADMP11310 421 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 KRT9P35527 623 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 ATXN3P54252 364 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 RAPGEF1Q13905 1077 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 KCNJ12Q14500 433 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 DCAF6Q58WW2 860 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 MS4A13Q5J8X5 152 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 RAP1GAP2Q684P5 730 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 KIAA0907Q7Z7F0 614 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 SLC47A2Q86VL8 602 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 CHSY1Q86X52 802 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 LGI2Q8N0V4 545 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 ZNF557Q8N988 423 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 OR2T3Q8NH03 318 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 GPR174Q9BXC1 333 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 IRX2Q9BZI1 471 aaPredicted RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 FAM204AQ9H8W3 233 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 PLCB1Q9NQ66 1216 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 ITM2CQ9NQX7 267 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 SAMSN1Q9NSI8 373 aaKnown RBP16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 COX16Q9P0S2 106 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 KNL1Q8NG31 2342 aa16.29■□□□□ 0.2
CCDC88B-205ENST00000472524 WDFY3Q8IZQ1 3526 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 MEI4A8MW99 385 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 UPK3BL1B0FP48 263 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 UPK3BL2E5RIL1 263 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 IGLV3-25P01717 112 aa16.28■□□□□ 0.2
CCDC88B-205ENST00000472524 ATP5BP06576 529 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms