RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 CISD3P0C7P0 127 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 HOXD9P28356 352 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 AVPR2P30518 371 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ADRA1BP35368 520 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 GRIA2P42262 883 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 MAGEA1P43355 309 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 RPS24P62847 133 aaKnown RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ZNF252P-AS1Q0IIN9 211 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 AUHQ13825 339 aaKnown RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 CCINQ13939 588 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 LRRC32Q14392 662 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 DGKKQ5KSL6 1271 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 FBXL22Q6P050 247 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 SCYL2Q6P3W7 929 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 TMEM139Q8IV31 216 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 PHTF2Q8N3S3 785 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ARFGAP1Q8N6T3 406 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 HJURPQ8NCD3 748 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ZNF564Q8TBZ8 553 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 SPOCK2Q92563 424 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 NTAN1Q96AB6 310 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 CLDN23Q96B33 292 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 PRICKLE1Q96MT3 831 aaPredicted RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 EIF3CQ99613 913 aaKnown RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 NCAPGQ9BPX3 1015 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 SLC2A11Q9BYW1 496 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ARHGEF4Q9NR80 690 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 TMPRSS4Q9NRS4 437 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 CTTNBP2NLQ9P2B4 639 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 UVRAGQ9P2Y5 699 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 ANAPC7Q9UJX3 599 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 CLEC4EQ9ULY5 219 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 PCDHA13Q9Y5I0 950 aa12.36□□□□□ -0.43
VPS13D-204ENST00000469054 HELZP42694 1942 aaKnown RBP12.36□□□□□ -0.43
VPS13D-204ENST00000469054 COL4A2P08572 1712 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 TBC1D3BA6NDS4 549 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 TRIM24O15164 1050 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 KAT7O95251 611 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 NDUFA10O95299 355 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 GGCXP38435 758 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 MAGEA9P43362 315 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 RPS9P46781 194 aaKnown RBP12.35□□□□□ -0.43
VPS13D-204ENST00000469054 DGKGP49619 791 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 KDSRQ06136 332 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 MESP2Q0VG99 397 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 PIGHQ14442 188 aaPredicted RBP12.35□□□□□ -0.43
VPS13D-204ENST00000469054 ACAP1Q15027 740 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 FBXO43Q4G163 708 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 RNF43Q68DV7 783 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 GRAMD4Q6IC98 578 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 LRRC31Q6UY01 552 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 RAD9BQ6WBX8 426 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 SLFN11Q7Z7L1 901 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 C14orf80Q86SX3 495 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 CFAP52Q8N1V2 620 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 SYNPOQ8N3V7 929 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 CCDC185Q8N715 623 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 TMEM105Q8N8V8 129 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 TERB1Q8NA31 727 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 BTBD6Q96KE9 485 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 RPRD1AQ96P16 312 aaPredicted RBP12.35□□□□□ -0.43
VPS13D-204ENST00000469054 OSBPL2Q9H1P3 480 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 RBM12Q9NTZ6 932 aaKnown RBP12.35□□□□□ -0.43
VPS13D-204ENST00000469054 DLGAP2Q9P1A6 1054 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 STIM2Q9P246 746 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 IP6K2Q9UHH9 426 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 VANGL2Q9ULK5 521 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 SLC27A6Q9Y2P4 619 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 COL4A3Q01955 1670 aa12.35□□□□□ -0.43
VPS13D-204ENST00000469054 BDP1A6H8Y1 2624 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 DRGXA6NNA5 263 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 K7EQS6 105 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 IPO7O95373 1038 aaKnown RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 MIPP30301 263 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 PCK1P35558 622 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 AIF1P55008 147 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 NRG1Q02297 640 aaPredicted RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 SCAPQ12770 1279 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 C5orf22Q49AR2 442 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 RABGAP1LQ5R372 815 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 TTC39BQ5VTQ0 682 aaPredicted RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 NUDT18Q6ZVK8 323 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 MFN1Q8IWA4 741 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 RHOT2Q8IXI1 618 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 ZNF683Q8IZ20 524 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 NIPA2Q8N8Q9 360 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 ZNF557Q8N988 423 aaPredicted RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 CCDC26Q8TAB7 109 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 SLC35G2Q8TBE7 412 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 EZH1Q92800 747 aaPredicted RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 IGSF8Q969P0 613 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 OSGEPQ9NPF4 335 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 LUC7LQ9NQ29 371 aaKnown RBP12.34□□□□□ -0.43
VPS13D-204ENST00000469054 FZD10Q9ULW2 581 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 SNX10Q9Y5X0 201 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 TICRRQ7Z2Z1 1910 aa12.34□□□□□ -0.43
VPS13D-204ENST00000469054 IGLV3-10A0A075B6K4 115 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 A0A1B0GVM2 712 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 TCAF2A6NFQ2 919 aa12.33□□□□□ -0.44
VPS13D-204ENST00000469054 E9PAM4 449 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms