RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 FKBP3Q00688 224 aaKnown RBP23.54■■□□□ 1.36
USP4-208ENST00000464168 LRMPQ12912 555 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 MPP7Q5T2T1 576 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 PIK3R6Q5UE93 754 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 SLC35F5Q8WV83 523 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 SLC35C1Q96A29 364 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 BIRC7Q96CA5 298 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 ANKRD6Q9Y2G4 727 aa23.54■■□□□ 1.36
USP4-208ENST00000464168 LOC400499M0QZD8 3231 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 TBL1XO60907 577 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 SLC6A4P31645 630 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 RGS7P49802 495 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 SUZ12Q15022 739 aaKnown RBP23.53■■□□□ 1.36
USP4-208ENST00000464168 TEAD4Q15561 434 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 COBLL1Q53SF7 1204 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 FAM133BQ5BKY9 247 aaKnown RBP23.53■■□□□ 1.36
USP4-208ENST00000464168 PMF1Q6P1K2 205 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 TMPRSS7Q7RTY8 843 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 LMLNQ96KR4 655 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 ZSWIM1Q9BR11 485 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 IRX2Q9BZI1 471 aaPredicted RBP23.53■■□□□ 1.36
USP4-208ENST00000464168 GDPD2Q9HCC8 539 aa23.53■■□□□ 1.36
USP4-208ENST00000464168 MUC22E2RYF6 1773 aaPredicted RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 GOLGA4Q13439 2230 aaKnown RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 PIK3R2O00459 728 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 KCNK3O14649 394 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 FSBPO95073 299 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 DNTTP04053 509 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 POLR2EP19388 210 aaKnown RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 TBXAS1P24557 533 aaPredicted RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 CD27P26842 260 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 GRIA4P48058 902 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 KCNT1Q5JUK3 1230 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 ZNF658Q5TYW1 1059 aaPredicted RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 C19orf48Q6RUI8 117 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 LAYNQ6UX15 382 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 UNC45BQ8IWX7 931 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 MDM1Q8TC05 714 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 IRGQQ8WZA9 623 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 CCDC34Q96HJ3 373 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 TSG101Q99816 390 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 ORAI3Q9BRQ5 295 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 MTG2Q9H4K7 406 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 RMND1Q9NWS8 449 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 ARMCX3Q9UH62 379 aaPredicted RBP23.52■■□□□ 1.36
USP4-208ENST00000464168 SUN2Q9UH99 717 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 ATP6V1DQ9Y5K8 247 aa23.52■■□□□ 1.36
USP4-208ENST00000464168 IRAK2O43187 625 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 ACSL4O60488 711 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 PAEPP09466 180 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 SLC11A2P49281 568 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 CNGA2Q16280 664 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 NUGGCQ68CJ6 796 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 NADSYN1Q6IA69 706 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 TMEM270Q6UE05 265 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 FMR1NBQ8N0W7 255 aaPredicted RBP23.51■■□□□ 1.35
USP4-208ENST00000464168 GOLGA1Q92805 767 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 IGSF8Q969P0 613 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 AZIN2Q96A70 460 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 TTC17Q96AE7 1141 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 MYO19Q96H55 970 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 RSPH9Q9H1X1 276 aaPredicted RBP23.51■■□□□ 1.35
USP4-208ENST00000464168 SGK2Q9HBY8 427 aa23.51■■□□□ 1.35
USP4-208ENST00000464168 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.51■■□□□ 1.35
USP4-208ENST00000464168 RNF225M0QZC1 329 aaPredicted RBP23.5■■□□□ 1.35
USP4-208ENST00000464168 TTC31Q49AM3 519 aaPredicted RBP23.5■■□□□ 1.35
USP4-208ENST00000464168 ZNF776Q68DI1 518 aaPredicted RBP23.5■■□□□ 1.35
USP4-208ENST00000464168 MARCH9Q86YJ5 346 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 FIBINQ8TAL6 211 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 CLEC4CQ8WTT0 213 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 MYEOVQ96EZ4 313 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 GSDMAQ96QA5 445 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 STIM2Q9P246 746 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 PTPRBP23467 1997 aa23.5■■□□□ 1.35
USP4-208ENST00000464168 TRIM49BA6NDI0 452 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 GOLGA8CPA6NN73 597 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 H0Y8X5 98 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 PCDHGA12O60330 932 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 LTFP02788 710 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 IGHV4-34P06331 123 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 CTSKP43235 329 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 TBX4P57082 545 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 PRICKLE1Q96MT3 831 aaPredicted RBP23.49■■□□□ 1.35
USP4-208ENST00000464168 INTS6Q9UL03 887 aaKnown RBP23.49■■□□□ 1.35
USP4-208ENST00000464168 PCDHB4Q9Y5E5 795 aa23.49■■□□□ 1.35
USP4-208ENST00000464168 SMG1Q96Q15 3661 aaKnown RBP23.49■■□□□ 1.35
USP4-208ENST00000464168 URB1O60287 2271 aaKnown RBP23.48■■□□□ 1.35
USP4-208ENST00000464168 TNFSF14O43557 240 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 CALCAP01258 141 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 FYNP06241 537 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 CSKP41240 450 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 FMO5P49326 533 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 LRRC63Q05C16 580 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 USP30Q70CQ3 517 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 MFN1Q8IWA4 741 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 ZNF557Q8N988 423 aaPredicted RBP23.48■■□□□ 1.35
USP4-208ENST00000464168 HJURPQ8NCD3 748 aaPredicted RBP23.48■■□□□ 1.35
USP4-208ENST00000464168 SPATA20Q8TB22 786 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 KAT5Q92993 513 aa23.48■■□□□ 1.35
USP4-208ENST00000464168 FCRL2Q96LA5 508 aaPredicted RBP23.48■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms