RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 VCX3BQ9H321 246 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 WDR55Q9H6Y2 383 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 RSAD1Q9HA92 442 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PPCSQ9HAB8 311 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 VCX3AQ9NNX9 186 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 SSU72Q9NP77 194 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 RPL26L1Q9UNX3 145 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PFDN1O60925 122 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 MICAL2O94851 1124 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 IL18RAPO95256 599 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 NFICP08651 508 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 TYK2P29597 1187 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 GABRB2P47870 512 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 FOLH1Q04609 750 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 KCNJ11Q14654 390 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PPM1LQ5SGD2 360 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PDPK2PQ6A1A2 396 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 EFCAB12Q6NXP0 572 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PLD5Q8N7P1 536 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CCNYQ8ND76 341 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 ICA1LQ8NDH6 482 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 ZSCAN18Q8TBC5 510 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CAB39LQ9H9S4 337 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 HEMK1Q9Y5R4 338 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 SCN4AP35499 1836 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 ADCY6O43306 1168 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 HOXD8P13378 290 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 PMLP29590 882 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 NUDT2P50583 147 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 USP46P62068 366 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 COG7P83436 770 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 MSLNQ13421 630 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 CCNIQ14094 377 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 TRNP1Q6NT89 227 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 FBXL19Q6PCT2 694 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 RBM44Q6ZP01 1051 aaKnown RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 SLC4A11Q8NBS3 891 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 MPHOSPH6Q99547 160 aaKnown RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 PRPF18Q99633 342 aaKnown RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 PDZD7Q9H5P4 517 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 CDH22Q9UJ99 828 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 POMPQ9Y244 141 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 STX16-NPEPL1H3BU86 382 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 SERPINA6P08185 405 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 TXNP10599 105 aaKnown RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 ENO3P13929 434 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 TMED1Q13445 227 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 KCTD2Q14681 263 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 DLG2Q15700 870 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 SLC5A9Q2M3M2 681 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 WDR78Q5VTH9 848 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 PPP1R13LQ8WUF5 828 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 FAM172AQ8WUF8 416 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 LGMNQ99538 433 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 COPS7BQ9H9Q2 264 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 DMAP1Q9NPF5 467 aaPredicted RBP12.78□□□□□ -0.36
HDAC4-208ENST00000463007 ASNSD1Q9NWL6 643 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 EFR3BQ9Y2G0 817 aa12.78□□□□□ -0.36
HDAC4-208ENST00000463007 APOL1O14791 398 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 CREB3O43889 395 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 CILPO75339 1184 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 GLRBP48167 497 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 INHBCP55103 352 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 NOMO1Q15155 1222 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 CNGA3Q16281 694 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 CYP4V2Q6ZWL3 525 aaPredicted RBP12.77□□□□□ -0.36
HDAC4-208ENST00000463007 ARMCX2Q7L311 632 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 SNX31Q8N9S9 440 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 ZC3H15Q8WU90 426 aaKnown RBP12.77□□□□□ -0.36
HDAC4-208ENST00000463007 NR1H4Q96RI1 486 aaPredicted RBP12.77□□□□□ -0.36
HDAC4-208ENST00000463007 APOL2Q9BQE5 337 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 C16orf70Q9BSU1 422 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 PLAC1Q9HBJ0 212 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 USP29Q9HBJ7 922 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 THAP1Q9NVV9 213 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 ERAP1Q9NZ08 941 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 TMEM216Q9P0N5 145 aa12.77□□□□□ -0.36
HDAC4-208ENST00000463007 BUD23O43709 281 aaKnown RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 LGALS2P05162 132 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 MCF2P10911 925 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 VAV1P15498 845 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 FGFR3P22607 806 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ARRB2P32121 409 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PDK1Q15118 436 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 NRF1Q16656 503 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 TEX44Q53QW1 395 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ZNF484Q5JVG2 852 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 FASTKD5Q7L8L6 764 aaKnown RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ZBTB46Q86UZ6 589 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PCDH19Q8TAB3 1148 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ANKRD36BP1Q96IX9 119 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 C7orf26Q96N11 449 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 ELOVL4Q9GZR5 314 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 SEMA6AQ9H2E6 1030 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PRMT7Q9NVM4 692 aaPredicted RBP12.77□□□□□ -0.37
HDAC4-208ENST00000463007 PAK5Q9P286 719 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 COL1A2P08123 1366 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 C15orf38-AP3S2A0A0A6YYH1 394 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 A0A1B0GTW7 788 aa12.77□□□□□ -0.37
HDAC4-208ENST00000463007 SDR42E2A6NKP2 422 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms