RNA–Protein interactions for RNA: ENST00000461608.1

HDAC6-212, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-212ENST00000461608 PTGFRNQ9P2B2 879 aa3.39□□□□□ -1.87
HDAC6-212ENST00000461608 IFT80Q9P2H3 777 aaPredicted RBP3.39□□□□□ -1.87
HDAC6-212ENST00000461608 SWAP70Q9UH65 585 aa3.39□□□□□ -1.87
HDAC6-212ENST00000461608 KCND3Q9UK17 655 aa3.39□□□□□ -1.87
HDAC6-212ENST00000461608 TRPC5Q9UL62 973 aaPredicted RBP3.39□□□□□ -1.87
HDAC6-212ENST00000461608 AFG3L2Q9Y4W6 797 aa3.39□□□□□ -1.87
HDAC6-212ENST00000461608 SIRT4Q9Y6E7 314 aaPredicted RBP3.39□□□□□ -1.87
HDAC6-212ENST00000461608 LINC00473A8K010 186 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 H3BNC9 293 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ANP32CO43423 234 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 USP12O75317 370 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 BAIAP3O94812 1187 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 HEXIM1O94992 359 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 METTL18O95568 372 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 DDX58O95786 925 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 HSP90AA1P07900 732 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ELFN1P0C7U0 828 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 JUPP14923 745 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 WT1P19544 449 aaPredicted RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 RXRGP48443 463 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 CCR5P51681 352 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 OAZ1P54368 228 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 EIF5P55010 431 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 NAP1L1P55209 391 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 WDR5P61964 334 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 GPC5P78333 572 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 RAE1P78406 368 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 MPP1Q00013 466 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 DLGAP5Q15398 846 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 CNGA3Q16281 694 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 GPR162Q16538 588 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 RUNDC3AQ59EK9 446 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 CBWD5Q5RIA9 395 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 C16orf89Q6UX73 402 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 SLC39A5Q6ZMH5 540 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 LAS2Q8IYD9 372 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 TCP11L2Q8N4U5 519 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 CSGALNACT1Q8TDX6 532 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 AKAP1Q92667 903 aaKnown RBP eCLIP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 DAZAP1Q96EP5 407 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 EDC3Q96F86 508 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 BBC3Q96PG8 261 aaPredicted RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 MMS19Q96T76 1030 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 MECRQ9BV79 373 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ADGRE3Q9BY15 652 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 TRIM2Q9C040 744 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 SAP30LQ9HAJ7 183 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 PRDM16Q9HAZ2 1276 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 USP29Q9HBJ7 922 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ERVK-5Q9HDB9 667 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ADARB2Q9NS39 739 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ABHD10Q9NUJ1 306 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 SLC17A6Q9P2U8 582 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 FBXO2Q9UK22 296 aaPredicted RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 ENTPD2Q9Y5L3 495 aa3.38□□□□□ -1.87
HDAC6-212ENST00000461608 COPG1Q9Y678 874 aaKnown RBP3.38□□□□□ -1.87
HDAC6-212ENST00000461608 GOLGA6L10A0A0M3HER8 536 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 GRID2IPA4D2P6 1211 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 KRTAP29-1A8MX34 341 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 B4E171 279 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 UBE2Q2LH0YL09 131 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 STX16-NPEPL1H3BU86 382 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 STX16O14662 325 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ZNF213O14771 459 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 CA12O43570 354 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 SGPL1O95470 568 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 MT-CO3P00414 261 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 C1RP00736 705 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 CHRM5P08912 532 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 FAM163BP0C2L3 166 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ALADP13716 330 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 CHN1P15882 459 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 GALNSP34059 522 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 PGM1P36871 562 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 TSPAN7P41732 249 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 FAM3BP58499 235 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 DEUP1Q05D60 604 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 G3BP1Q13283 466 aaKnown RBP eCLIP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 PDCLQ13371 301 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 SIM2Q14190 667 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 KCNB1Q14721 858 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 LARS2Q15031 903 aaKnown RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 BAK1Q16611 211 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 PCID2Q5JVF3 399 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ZNF484Q5JVG2 852 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 WDR45BQ5MNZ6 344 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ZKSCAN2Q63HK3 967 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 CLEC4GQ6UXB4 293 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 TRIM72Q6ZMU5 477 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 C4orf50Q6ZRC1 276 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 TERB1Q8NA31 727 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 CAGE1Q8TC20 777 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 RFFLQ8WZ73 363 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ST8SIA4Q92187 359 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ARRDC3Q96B67 414 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 MCRS1Q96EZ8 462 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 TRMT61AQ96FX7 289 aaKnown RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 ZNF845Q96IR2 970 aaPredicted RBP3.37□□□□□ -1.87
HDAC6-212ENST00000461608 C7orf26Q96N11 449 aa3.37□□□□□ -1.87
HDAC6-212ENST00000461608 LENG8Q96PV6 779 aaPredicted RBP3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms