RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 SCNN1AP37088 669 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 GABRB2P47870 512 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 DHPSP49366 369 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 KLK7P49862 253 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 RPS24P62847 133 aaKnown RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 FOXK2Q01167 660 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 MTA1Q13330 715 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 NCAPHQ15003 741 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 SF3A2Q15428 464 aaKnown RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 FUT11Q495W5 492 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 AASDHQ4L235 1098 aaPredicted RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 CAVIN1Q6NZI2 390 aaKnown RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 DGLUCYQ7Z3D6 616 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 CYP2U1Q7Z449 544 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 ERICH1Q86X53 443 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 ZNF677Q86XU0 584 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 FRMD1Q8N878 549 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 ATP6V0D2Q8N8Y2 350 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 MSANTD4Q8NCY6 345 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 C18orf8Q96DM3 657 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 RTKNQ9BST9 563 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 RRN3Q9NYV6 651 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 STIM2Q9P246 746 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 XPO7Q9UIA9 1087 aaKnown RBP16.7■□□□□ 0.26
COL7A1-203ENST00000459756 CACNA1AO00555 2505 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 NUP205Q92621 2012 aa16.7■□□□□ 0.26
COL7A1-203ENST00000459756 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 AP5Z1O43299 807 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 GFPT2O94808 682 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 DLDP09622 509 aaKnown RBP16.69■□□□□ 0.26
COL7A1-203ENST00000459756 ABCB4P21439 1286 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 TACR2P21452 398 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 PRKCHP24723 683 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 CD70P32970 193 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 SOX5P35711 763 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 MATKP42679 507 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 JAM2P57087 298 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 UBXN1Q04323 297 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 CDH18Q13634 790 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 SYCP1Q15431 976 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 FNDC3BQ53EP0 1204 aaKnown RBP16.69■□□□□ 0.26
COL7A1-203ENST00000459756 RAP1GAP2Q684P5 730 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 MBLAC2Q68D91 279 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 METTL3Q86U44 580 aaKnown RBP16.69■□□□□ 0.26
COL7A1-203ENST00000459756 CHSY1Q86X52 802 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 TMEFF1Q8IYR6 380 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 LGI2Q8N0V4 545 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 AOPEPQ8N6M6 819 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 WFDC5Q8TCV5 224 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 RNF34Q969K3 372 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 ERLEC1Q96DZ1 483 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 MYEOVQ96EZ4 313 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 PCMTD1Q96MG8 357 aaPredicted RBP16.69■□□□□ 0.26
COL7A1-203ENST00000459756 SPAG5Q96R06 1193 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 HSD3B7Q9H2F3 369 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 TMEM245Q9H330 911 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 PRDM16Q9HAZ2 1276 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 NLRC4Q9NPP4 1024 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 TMEM51Q9NW97 253 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 NOCTQ9UK39 431 aaKnown RBP16.69■□□□□ 0.26
COL7A1-203ENST00000459756 CKAP5Q14008 2032 aa16.69■□□□□ 0.26
COL7A1-203ENST00000459756 SYNJ2BP-COX16A0A087WUM0 186 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 IGHV1OR15-9A0A0B4J2B8 117 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 F5H5T6 163 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 SLC30A4O14863 429 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 EPHB6O15197 1021 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 LUC7L3O95232 432 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 EPHX1P07099 455 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 MMEP08473 750 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 POLR2EP19388 210 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 STAT1P42224 750 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 DPP6P42658 865 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 LIMK1P53667 647 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 ATXN1P54253 815 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 CDR2Q01850 454 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 RPL6Q02878 288 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 ANO6Q4KMQ2 910 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 TTC39BQ5VTQ0 682 aaPredicted RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 KIAA1324Q6UXG2 1013 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 APTXQ7Z2E3 356 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 CFAP52Q8N1V2 620 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 CARNMT1Q8N4J0 409 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 NEK11Q8NG66 645 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 CYB5D2Q8WUJ1 264 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 LMLNQ96KR4 655 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 ERGIC2Q96RQ1 377 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 BPIFA3Q9BQP9 254 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 MKRN2Q9H000 416 aaKnown RBP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 SLC6A17Q9H1V8 727 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 SMOC1Q9H4F8 434 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.68■□□□□ 0.26
COL7A1-203ENST00000459756 COX16Q9P0S2 106 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 STAP1Q9ULZ2 295 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 CYP8B1Q9UNU6 501 aa16.68■□□□□ 0.26
COL7A1-203ENST00000459756 MUC22E2RYF6 1773 aaPredicted RBP16.67■□□□□ 0.26
COL7A1-203ENST00000459756 M0QYT0 321 aa16.67■□□□□ 0.26
COL7A1-203ENST00000459756 GDF9O60383 454 aa16.67■□□□□ 0.26
COL7A1-203ENST00000459756 PTGER3P43115 390 aa16.67■□□□□ 0.26
COL7A1-203ENST00000459756 RNASE9P60153 205 aaKnown RBP16.67■□□□□ 0.26
COL7A1-203ENST00000459756 NOMO3P69849 1222 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms