RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 LRIG2O94898 1065 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PENKP01210 267 aaPredicted RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 TSPAN19P0C672 248 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PDGFRAP16234 1089 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 GPD1P21695 349 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 HTR7P34969 479 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 MMP13P45452 471 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 FXR1P51114 621 aaKnown RBP eCLIP7.34□□□□□ -1.23
VPS53-204ENST00000437048 R3HCC1LQ7Z5L2 792 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 MTDHQ86UE4 582 aaKnown RBP7.34□□□□□ -1.23
VPS53-204ENST00000437048 CD101Q93033 1021 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 PAFAH2Q99487 392 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 C1QTNF1Q9BXJ1 281 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 IL22Q9GZX6 179 aa7.34□□□□□ -1.23
VPS53-204ENST00000437048 M0R2C6 588 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 CXCR2P25025 360 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 AIF1P55008 147 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 ZNF844Q08AG5 666 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 ACAD10Q6JQN1 1059 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 NKX2-3Q8TAU0 364 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 GIPC3Q8TF64 312 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 SH3KBP1Q96B97 665 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 CREB3L1Q96BA8 519 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 SGF29Q96ES7 293 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 AIREO43918 545 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 LRRC14Q15048 493 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 ZMYND11Q15326 602 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 VPS26BQ4G0F5 336 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 CMPK2Q5EBM0 449 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 HIPK1Q86Z02 1210 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 ALDH16A1Q8IZ83 802 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 RTKNQ9BST9 563 aa7.34□□□□□ -1.24
VPS53-204ENST00000437048 DDX43Q9NXZ2 648 aaKnown RBP7.34□□□□□ -1.24
VPS53-204ENST00000437048 SSNA1O43805 119 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 MYCP01106 439 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 MEA1Q16626 185 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 HKDC1Q2TB90 917 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ANO7Q6IWH7 933 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SVOPLQ8N434 492 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 LINC00471Q8N535 108 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 OR56A4Q8NGH8 313 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 TCF12Q99081 682 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 TRIM2Q9C040 744 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 GSTT2BP0CG30 244 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 CDK9P50750 372 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 ZNF746Q6NUN9 644 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 PTCD2Q8WV60 388 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 POF1BQ8WVV4 589 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RFKQ969G6 155 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 OSBP2Q969R2 916 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 WDR70Q9NW82 654 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RCOR3Q9P2K3 495 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 ZNF112Q9UJU3 913 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ALDH1A3P47895 512 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SHC4Q6S5L8 630 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 LARGE2Q8N3Y3 721 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 UNKLQ9H9P5 680 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 SETD1AO15047 1707 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 RGSL1A5PLK6 1076 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ADAMTS2O95450 1211 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PGAM1P18669 254 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 NME5P56597 212 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 LIN52Q52LA3 116 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 CDC26Q8NHZ8 85 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FAM84AQ96KN4 292 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PPP1R10Q96QC0 940 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 SETD4Q9NVD3 440 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ZNF180Q9UJW8 692 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PNPLA6Q8IY17 1366 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 AGRPO00253 132 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FCHO1O14526 889 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 CYP1A2P05177 515 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ETS1P14921 441 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 TDGQ13569 410 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RDH12Q96NR8 316 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 DSN1Q9H410 356 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 KBTBD4Q9NVX7 518 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 MEMO1Q9Y316 297 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PROSCO94903 275 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ZCCHC18P0CG32 403 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FBXW4P57775 412 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PEX6Q13608 980 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 HERC3Q15034 1050 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 FAM220AQ7Z4H9 259 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 UBE2Q1Q7Z7E8 422 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RNF217Q8TC41 542 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 ZNF594Q96JF6 807 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 TSEN34Q9BSV6 310 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 TAS2R7Q9NYW3 318 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 CD274Q9NZQ7 290 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 SLC25A13Q9UJS0 675 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 LRFN2Q9ULH4 789 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 RUVBL2Q9Y230 463 aaKnown RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 NFAT5O94916 1531 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 MADDQ8WXG6 1647 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 F8W031 263 aaPredicted RBP7.33□□□□□ -1.24
VPS53-204ENST00000437048 M0QYV0 167 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 PGRMC2O15173 223 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 S100A12P80511 92 aa7.33□□□□□ -1.24
VPS53-204ENST00000437048 TSTA3Q13630 321 aaPredicted RBP7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms