RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NAPRTQ6XQN6 538 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 HFE2Q6ZVN8 426 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 STRA8Q7Z7C7 330 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 SNX32Q86XE0 403 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 MAP7D3Q8IWC1 876 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RTKN2Q8IZC4 609 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TTC13Q8NBP0 860 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 VCPIP1Q96JH7 1222 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 NPAS2Q99743 824 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 SLC39A3Q9BRY0 314 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 CNPY3Q9BT09 278 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 NRDE2Q9H7Z3 1164 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 IARS2Q9NSE4 1012 aaKnown RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 LRCH1Q9Y2L9 728 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ANKRD31Q8N7Z5 1873 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM72CH0Y354 149 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RNF103O00237 685 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TBC1D12O60347 775 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 DNAJA2O60884 412 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 GABBR2O75899 941 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 MOCS2O96007 188 aaPredicted RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 MT-ND1P03886 318 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 SULT1E1P49888 294 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RALGDSQ12967 914 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 CTBP1Q13363 440 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 VGLL4Q14135 290 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TCEAL1Q15170 157 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM72AQ5TYM5 149 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM72DQ6L9T8 149 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM72BQ86X60 149 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ICA1LQ8NDH6 482 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ZMAT2Q96NC0 199 aaKnown RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 CDRT15Q96T59 188 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ECSITQ9BQ95 431 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RNF39Q9H2S5 420 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 CHRAC1Q9NRG0 131 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 GIMAP2Q9UG22 337 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 SH3BP1Q9Y3L3 701 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 MCM3APO60318 1980 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 C2CD4BA6NLJ0 364 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RGL2O15211 777 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ZBTB14O43829 449 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 BPGMP07738 259 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 CCDC15Q0P6D6 951 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ADIGQ0VDE8 80 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 LAMB3Q13751 1172 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TFDP2Q14188 446 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 POU6F1Q14863 301 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 LGSNQ5TDP6 509 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 MAVSQ7Z434 540 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM83AQ86UY5 434 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 DEFB106AQ8N104 65 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 GRIN3AQ8TCU5 1115 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 LENG8Q96PV6 779 aaPredicted RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 KCTD15Q96SI1 283 aaPredicted RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 NT5C1AQ9BXI3 368 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 NXF3Q9H4D5 531 aaKnown RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 PRDM12Q9H4Q4 367 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TASP1Q9H6P5 420 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 GTSE1Q9NYZ3 720 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 NME7Q9Y5B8 376 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 CROCCQ5TZA2 2017 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ATAD5Q96QE3 1844 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 BEST1O76090 585 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CHRM1P11229 460 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 RALBP11234 206 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 TPP2P29144 1249 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 ADCYAP1R1P41586 468 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 SKIV2L2P42285 1042 aaKnown RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 ZNF143P52747 638 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 COPAP53621 1224 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 NAGLUP54802 743 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 STILQ15468 1287 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 SYPL2Q5VXT5 272 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 OR52E8Q6IFG1 317 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CATSPERGQ6ZRH7 1159 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 TDRPQ86YL5 185 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 MYLK4Q86YV6 388 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 SPATA22Q8NHS9 363 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 B3GALT6Q96L58 329 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 TIPINQ9BVW5 301 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 KLHL4Q9C0H6 718 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 PAK5Q9P286 719 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 VCANP13611 3396 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 C10orf71Q711Q0 1435 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 M0QYT0 321 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CILPO75339 1184 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 MAFO75444 373 aaPredicted RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 SNUPNO95149 360 aaKnown RBP8.88□□□□□ -0.99
USP40-203ENST00000427112 CASP2P42575 452 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 INHBEP58166 350 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 ANO4Q32M45 955 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 EFHC1Q5JVL4 640 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 AMIGO2Q86SJ2 522 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 LRRC43Q8N309 656 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 B4GALNT2Q8NHY0 566 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 SLC7A14Q8TBB6 771 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 CDHR1Q96JP9 859 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 NDNQ99608 321 aa8.88□□□□□ -0.99
USP40-203ENST00000427112 PRPF18Q99633 342 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms