RNA–Protein interactions for RNA: ENST00000417997.1

HMGB3P20-201, Transcript of high mobility group box 3 pseudogene 20, humanhuman

BASIC

Gene HMGB3P20, Length 600 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P20-201ENST00000417997 GCLCP48506 637 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 GMPSP49915 693 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCT8P50990 548 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FXR1P51114 621 aaKnown RBP eCLIP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 MAP2K6P52564 334 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 HK3P52790 923 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PROK1P58294 105 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 NLRP5P59047 1200 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 IKQ13123 557 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PFKFB3Q16875 520 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PGS1Q32NB8 556 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZSCAN23Q3MJ62 389 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM119Q4V9L6 283 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC183Q5T5S1 534 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM179Q6ZVK1 233 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 USP37Q86T82 979 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PPP1R3BQ86XI6 285 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM90A1Q86YD7 464 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 APOBEC3FQ8IUX4 373 aaKnown RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FOXP4Q8IVH2 680 aaPredicted RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM46DQ8NEK8 389 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 GPT2Q8TD30 523 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 KCNG4Q8TDN1 519 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM151AQ8WW52 585 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 DDB2Q92466 427 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ANKS1AQ92625 1134 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 FAM136AQ96C01 138 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 RRP36Q96EU6 259 aaKnown RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PBKQ96KB5 322 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 USP28Q96RU2 1077 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 AMBRA1Q9C0C7 1298 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 TTYH3Q9C0H2 523 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 NUP62CLQ9H1M0 184 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 MRPL46Q9H2W6 279 aaKnown RBP4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 SH2D4AQ9H788 454 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 AASDHPPTQ9NRN7 309 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 GJB4Q9NTQ9 266 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 MTMR4Q9NYA4 1195 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 EHD3Q9NZN3 535 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 VPS54Q9P1Q0 977 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 DKK3Q9UBP4 350 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 CLIP2Q9UDT6 1046 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZDHHC8Q9ULC8 765 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 PADI4Q9UM07 663 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 KCNJ14Q9UNX9 436 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 CNTNAP1P78357 1384 aa4.25□□□□□ -1.73
HMGB3P20-201ENST00000417997 SCN4AP35499 1836 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PARP14Q460N5 1801 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PHIPQ8WWQ0 1821 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 IGKV6D-41A0A0C4DH26 115 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 CCDC194A0A1B0GVG4 234 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 hCG_1642624A0A1W2PR95 340 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 KIF28PB7ZC32 967 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 KLRF2D3W0D1 207 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 GCOM1H8Y6P7 765 aaPredicted RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 hCG_1984214I3L0E3 225 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SPTLC2O15270 562 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SOAT2O75908 522 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 LETM1O95202 739 aaPredicted RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 GH2P01242 217 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PDHA1P08559 390 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 POU2F2P09086 479 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 GOLGA8HP0CJ92 632 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PDHBP11177 359 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 EEF2P13639 858 aaKnown RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 TYRP14679 529 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 NDUFB7P17568 137 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 WT1P19544 449 aaPredicted RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 KCNJ5P48544 419 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 NAPAP54920 295 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PTPROQ16827 1216 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 RILPL1Q5EBL4 403 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PLAC9Q5JTB6 97 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 GPATCH4Q5T3I0 446 aaKnown RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 FKBP1CQ5VVH2 108 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 ANO1Q5XXA6 986 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 LAYNQ6UX15 382 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 TMEM108Q6UXF1 575 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 RASGRP2Q7LDG7 609 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SRBD1Q8N5C6 995 aaKnown RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 ZNF713Q8N859 430 aaPredicted RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 FSIP1Q8NA03 581 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 MRPS27Q92552 414 aaKnown RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 HOOK2Q96ED9 719 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 OSBPL9Q96SU4 736 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 ALG8Q9BVK2 526 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SPZ1Q9BXG8 430 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SLC29A3Q9BZD2 475 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 FTOQ9C0B1 505 aaKnown RBP eCLIP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 TNMDQ9H2S6 317 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 FOXP1Q9H334 677 aaPredicted RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 DNAJC18Q9H819 358 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 C6orf50Q9HD87 102 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 SH3GLB2Q9NR46 395 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 DDX19AQ9NUU7 478 aaKnown RBP4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 PNPOQ9NVS9 261 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 NYAP2Q9P242 653 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 IP6K2Q9UHH9 426 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 MAD2L2Q9UI95 211 aa4.24□□□□□ -1.73
HMGB3P20-201ENST00000417997 CNOT7Q9UIV1 285 aaKnown RBP4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms