RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GPR37L1O60883 481 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 CA4P22748 312 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 IL4RP24394 825 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 FOXN2P32314 431 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 PPM1AP35813 382 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 PDE4CQ08493 712 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 CDO1Q16878 200 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 SOWAHAQ2M3V2 549 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 SV2CQ496J9 727 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 SH3PXD2AQ5TCZ1 1133 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 CYB5D1Q6P9G0 228 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 PSTKQ8IV42 348 aaKnown RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 PQLC3Q8N755 202 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 CCDC63Q8NA47 563 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 OR6B3Q8NGW1 331 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 MAGEC3Q8TD91 643 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 LRRC8CQ8TDW0 803 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 MZB1Q8WU39 189 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 DCAKDQ8WVC6 231 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 PIWIL1Q96J94 861 aaKnown RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 WDR83Q9BRX9 315 aaKnown RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 EIF2AQ9BY44 585 aaKnown RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 SNX25Q9H3E2 840 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 ABCF3Q9NUQ8 709 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 RCOR3Q9P2K3 495 aaPredicted RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 INPP5FQ9Y2H2 1132 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.29■□□□□ 0.04
USP4-203ENST00000415188 TEX264Q9Y6I9 313 aa15.29■□□□□ 0.04
USP4-203ENST00000415188 TCRBV7S3A2A0A539 114 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 SPAG7O75391 227 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 UBOX5O94941 541 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 SSTR1P30872 391 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 TAF6P49848 677 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 HDAC4P56524 1084 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 ATP11AP98196 1134 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 BNIP1Q12981 228 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 ZKSCAN8Q15776 578 aaPredicted RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 SPDYAQ5MJ70 313 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 HP1BP3Q5SSJ5 553 aaPredicted RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 ICE2Q659A1 982 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 PDE12Q6L8Q7 609 aaKnown RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 SCYL2Q6P3W7 929 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 C1orf228Q6PIY5 440 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 NPNTQ6UXI9 565 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 STRADAQ7RTN6 431 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 ZC3H18Q86VM9 953 aaKnown RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 TMEM173Q86WV6 379 aaPredicted RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 PCDH19Q8TAB3 1148 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 ZNF398Q8TD17 642 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 SLC44A1Q8WWI5 657 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 TNIP3Q96KP6 325 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 CDCA3Q99618 268 aaPredicted RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 MRPL9Q9BYD2 267 aaKnown RBP15.28■□□□□ 0.04
USP4-203ENST00000415188 NRDE2Q9H7Z3 1164 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 C10orf88Q9H8K7 445 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 FAM49BQ9NUQ9 324 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 IKBKGQ9Y6K9 419 aa15.28■□□□□ 0.04
USP4-203ENST00000415188 HACD1B0YJ81 288 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 TRDMT1O14717 391 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 PPEF2O14830 753 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 KCNN4O15554 427 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 DCXO43602 365 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 EDF1O60869 148 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 ATP2C2O75185 946 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 BANF1O75531 89 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 GRAP2O75791 330 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 ATP5HO75947 161 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 TPSB2P20231 275 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 WARSP23381 471 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 RPA3P35244 121 aaPredicted RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 GNL1P36915 607 aaPredicted RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 ELK3P41970 407 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 GAD2Q05329 585 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 TPSAB1Q15661 275 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 SEPT7Q16181 437 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 SLC45A4Q5BKX6 768 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 NOMO2Q5JPE7 1267 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 EFHC1Q5JVL4 640 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 UBXN11Q5T124 520 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 CGB2Q6NT52 195 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 GLB1LQ6UWU2 654 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 CAPN12Q6ZSI9 719 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 BZW1Q7L1Q6 419 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 TMC7Q7Z402 723 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 PARP9Q8IXQ6 854 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 C4orf33Q8N1A6 199 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 TOP6BLQ8N6T0 577 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 C18orf25Q96B23 403 aaPredicted RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 PAIP2Q9BPZ3 127 aaKnown RBP15.27■□□□□ 0.04
USP4-203ENST00000415188 TBC1D13Q9NVG8 400 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 NME7Q9Y5B8 376 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 USH1CQ9Y6N9 552 aa15.27■□□□□ 0.04
USP4-203ENST00000415188 SMIM28A0A1B0GU29 152 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 KPNA7A9QM74 516 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 PIK3R2O00459 728 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 CHUKO15111 745 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 MGRN1O60291 552 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 B4GALT3O60512 393 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 ZNF623O75123 536 aa15.27■□□□□ 0.03
USP4-203ENST00000415188 GCATO75600 419 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms