RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 SSH3Q8TE77 659 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 NAT9Q9BTE0 207 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ANKRD6Q9Y2G4 727 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 PLEKHG1Q9ULL1 1385 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 ABCA10Q8WWZ4 1543 aa13.61□□□□□ -0.23
CCDC88A-204ENST00000413716 CYP4F2P78329 520 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CYP4F3Q08477 520 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 PRKAA1Q13131 559 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 STARD3Q14849 445 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CCNI2Q6ZMN8 369 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 BRINP3Q76B58 766 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ACOT12Q8WYK0 555 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 PIGKQ92643 395 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ARHGEF12Q9NZN5 1544 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 METTL18O95568 372 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 MYCBPAPQ8TBZ2 947 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 LRRC20Q8TCA0 184 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 UCMAQ8WVF2 138 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 FATE1Q969F0 183 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 IKZF3Q9UKT9 509 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 VPS72Q15906 364 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 RASGRP2Q7LDG7 609 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 GALNTL5Q7Z4T8 443 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF554Q86TJ5 538 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 BTBD10Q9BSF8 475 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 SNAP91O60641 907 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 NCK1P16333 377 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 RGS7P49802 495 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 SEC24CP53992 1094 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 IL18R1Q13478 541 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 TNFAIP8L1Q8WVP5 186 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CKAP2Q8WWK9 683 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 OSGEPL1Q9H4B0 414 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 MORF4L1Q9UBU8 362 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF214Q9UL59 606 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 INVSQ9Y283 1065 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 IRGMA1A4Y4 181 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 HDDC3Q8N4P3 179 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ART5Q96L15 291 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ACOX2Q99424 681 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ARPC4P59998 168 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 PRR23BQ6ZRT6 265 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 GUF1Q8N442 669 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF276Q8N554 614 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 PRCCQ92733 491 aaPredicted RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 GANQ9H2C0 597 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 ARMCX1Q9P291 453 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 TBC1D30Q9Y2I9 924 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 MCIDASD6RGH6 385 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 MAFKO60675 156 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CDK8P49336 464 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 FRG1Q14331 258 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 SULT1C3Q6IMI6 304 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 SWSAP1Q6NVH7 229 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 REXO5Q96IC2 774 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 EIF2AK1Q9BQI3 630 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CRISPLD1Q9H336 500 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 KIAA0586Q9BVV6 1533 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM172BPA6NC97 362 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 RFC5P40937 340 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 CYP3A43Q9HB55 503 aa13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 A1CFQ9NQ94 594 aaKnown RBP13.6□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC33A1O00400 549 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 AP1G2O75843 785 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ASS1P00966 412 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 THRBP10828 461 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 STXBP1P61764 594 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 XIAPP98170 497 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 FBXO31Q5XUX0 539 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 POTEHQ6S545 545 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF677Q86XU0 584 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 C12orf66Q96MD2 445 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 SLC12A4Q9UP95 1085 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 DNAJC16Q9Y2G8 782 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 COL17A1Q9UMD9 1497 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TFECO14948 347 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 GLP2RO95838 553 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF177Q13360 481 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 LRRC34Q8IZ02 419 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 INO80EQ8NBZ0 244 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 HPS3Q969F9 1004 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 AHCYL2Q96HN2 611 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 UPB1Q9UBR1 384 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 RAPGEFL1Q9UHV5 662 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 RECQL5O94762 991 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 IDH2P48735 452 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 GEMP55040 296 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TUBA1BP68363 451 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 LMBRD2Q68DH5 695 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TUBA1AQ71U36 451 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 FAM126BQ8IXS8 530 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 ZNF350Q9GZX5 532 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 METTL8Q9H825 291 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 DENND4BO75064 1496 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 USP27XA6NNY8 438 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 CLK3P49761 638 aaKnown RBP13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 SKA1Q96BD8 255 aa13.59□□□□□ -0.23
CCDC88A-204ENST00000413716 TTYH1Q9H313 450 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms