RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 ALLCQ8N6M5 410 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 CADM4Q8NFZ8 388 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 TRIM11Q96F44 468 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 AGPAT1Q99943 283 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 ANP32EQ9BTT0 268 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 FUCA2Q9BTY2 467 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 OSBPL2Q9H1P3 480 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 DUSP15Q9H1R2 295 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 FAM207AQ9NSI2 230 aaPredicted RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 FAM86C1Q9NVL1 165 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 ARHGEF38Q9NXL2 777 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 PPARGC1AQ9UBK2 798 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 CYTH4Q9UIA0 394 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 TMEM59LQ9UK28 342 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 NOCTQ9UK39 431 aaKnown RBP6.62□□□□□ -1.35
USP54-202ENST00000413442 TBC1D30Q9Y2I9 924 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.62□□□□□ -1.35
USP54-202ENST00000413442 STON1Q9Y6Q2 735 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 SPAG17Q6Q759 2223 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 CEP192Q8TEP8 1941 aa6.62□□□□□ -1.35
USP54-202ENST00000413442 EML5Q05BV3 1969 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 A0A1W2PQF6 199 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 DRGXA6NNA5 263 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 SGK1O00141 431 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 HAX1O00165 279 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 CBFA2T2O43439 604 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 TBL1XO60907 577 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 EPN2O95208 641 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 CHRM1P11229 460 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 ACADMP11310 421 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 KRT3P12035 628 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 ATP1A3P13637 1013 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 TACR2P21452 398 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 SDC4P31431 198 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 NUDT1P36639 197 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 CDH4P55283 916 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 UBASH3AP57075 661 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 GEMIN4P57678 1058 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 KRT83P78385 493 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 DEUP1Q05D60 604 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 LMAN2Q12907 356 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 ZNF177Q13360 481 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 CAMK2GQ13555 558 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 TRIM14Q14142 442 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PUM1Q14671 1186 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP54-202ENST00000413442 PLK5Q496M5 336 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PTPN20Q4JDL3 420 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 HSP90AA4PQ58FG1 418 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 FAM133BQ5BKY9 247 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 ZC3H12AQ5D1E8 599 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 SYCP2LQ5T4T6 812 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 EMC10Q5UCC4 262 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 ACAD10Q6JQN1 1059 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 SERPINA13PQ6UXR4 307 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 TMEM92Q6UXU6 159 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 FAM183BPQ6ZVS7 135 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 USP30Q70CQ3 517 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 BNIPLQ7Z465 357 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 IRF2BP2Q7Z5L9 587 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 DSG4Q86SJ6 1040 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 NOP9Q86U38 636 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 C12orf40Q86WS4 652 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 XYLT1Q86Y38 959 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PSTKQ8IV42 348 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 MFN1Q8IWA4 741 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 DHX40Q8IX18 779 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 PLPP6Q8IY26 295 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PGBD3Q8N328 593 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 CCDC33Q8N5R6 958 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 AOPEPQ8N6M6 819 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 C3orf20Q8ND61 904 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 OR2T3Q8NH03 318 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 CLEC4CQ8WTT0 213 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 NDRG1Q92597 394 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 CENPIQ92674 756 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 PRCCQ92733 491 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 WBP2Q969T9 261 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PHOX2BQ99453 314 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PRMT1Q99873 361 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 HINFPQ9BQA5 517 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 RTKNQ9BST9 563 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 HSD3B7Q9H2F3 369 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 TMEM245Q9H330 911 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 KDM4CQ9H3R0 1056 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 FAM204AQ9H8W3 233 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 PRDM16Q9HAZ2 1276 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 MRPL47Q9HD33 250 aaKnown RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 NLRC4Q9NPP4 1024 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 DDIT4Q9NX09 232 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 ADAM22Q9P0K1 906 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 BCCIPQ9P287 314 aaKnown RBP eCLIP6.61□□□□□ -1.35
USP54-202ENST00000413442 SUSD2Q9UGT4 822 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 EVLQ9UI08 416 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 GGA2Q9UJY4 613 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 NCKAP1Q9Y2A7 1128 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 FARP1Q9Y4F1 1045 aaPredicted RBP6.61□□□□□ -1.35
USP54-202ENST00000413442 CACNA1HO95180 2353 aa6.61□□□□□ -1.35
USP54-202ENST00000413442 THADAQ6YHU6 1953 aa6.6□□□□□ -1.35
USP54-202ENST00000413442 ITIH6Q6UXX5 1313 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms