RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 CCNIQ14094 377 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 TIGD2Q4W5G0 525 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 BMP2KLQ5H9B9 411 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 ZNF484Q5JVG2 852 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 ZNF362Q5T0B9 420 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-204ENST00000412061 NAA35Q5VZE5 725 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 IL27RAQ6UWB1 636 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 RTL10Q7L3V2 364 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 CEP97Q8IW35 865 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 OR8H3Q8N146 312 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 B3GALNT2Q8NCR0 500 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 APPL2Q8NEU8 664 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 OR8H1Q8NGG4 311 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 SLC22A17Q8WUG5 538 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 TMEM171Q8WVE6 324 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 HMGB4Q8WW32 186 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 FUBP1Q96AE4 644 aaKnown RBP4.89□□□□□ -1.63
BRCA1-204ENST00000412061 EYA3Q99504 573 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 TPSD1Q9BZJ3 242 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 XAB2Q9HCS7 855 aaKnown RBP4.89□□□□□ -1.63
BRCA1-204ENST00000412061 MTRRQ9UBK8 725 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 DNAJB11Q9UBS4 358 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 DKK2Q9UBU2 259 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 SEL1LQ9UBV2 794 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 CHORDC1Q9UHD1 332 aaPredicted RBP4.89□□□□□ -1.63
BRCA1-204ENST00000412061 LYVE1Q9Y5Y7 322 aa4.89□□□□□ -1.63
BRCA1-204ENST00000412061 FAM90A20PA6NIJ5 464 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 KIF28PB7ZC32 967 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 UBE2CO00762 179 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 TSPAN4O14817 238 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ZSCAN9O15535 394 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 PEX11BO96011 259 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ARP10275 920 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 SCG2P13521 617 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 PPP3CBP16298 524 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 NR4A1P22736 598 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 NFKBIAP25963 317 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ZFP36P26651 326 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ADORA2AP29274 412 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 EPHA3P29320 983 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 EPHA8P29322 1005 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 EIF2DP41214 584 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 MAGEA10P43363 369 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 PGDP52209 483 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 RARSP54136 660 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 TMF1P82094 1093 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 GUCY1B3Q02153 619 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 GPS1Q13098 491 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 SMC1AQ14683 1233 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 NRN1LQ496H8 165 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 SPDYAQ5MJ70 313 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 KAZNQ674X7 775 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 KRTAP5-3Q6L8H2 238 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 SYNE3Q6ZMZ3 975 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 CCDC91Q7Z6B0 441 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 TTC30AQ86WT1 665 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 LMNTD2Q8IXW0 634 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 CNTROBQ8N137 903 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 SYNE4Q8N205 404 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 NFKBIDQ8NI38 313 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ETNPPLQ8TBG4 499 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 OSCP1Q8WVF1 389 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 JAKMIP2Q96AA8 810 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ZDHHC12Q96GR4 267 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 RBM17Q96I25 401 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 MYCBPQ99417 103 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 ACTRT3Q9BYD9 372 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 XPO4Q9C0E2 1151 aaKnown RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 VEZTQ9HBM0 779 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 FSCN3Q9NQT6 498 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 TBCCD1Q9NVR7 557 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 HCFC1R1Q9NWW0 138 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 CORO1CQ9ULV4 474 aaPredicted RBP4.88□□□□□ -1.63
BRCA1-204ENST00000412061 FZD1Q9UP38 647 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 TSC22D4Q9Y3Q8 395 aa4.88□□□□□ -1.63
BRCA1-204ENST00000412061 OR2W5A6NFC9 320 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 UNC119BA6NIH7 251 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 SAC3D1A6NKF1 404 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 PEX12O00623 359 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 SH2B2O14492 632 aaPredicted RBP4.87□□□□□ -1.63
BRCA1-204ENST00000412061 PLSCR1O15162 318 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 HTATSF1O43719 755 aaKnown RBP4.87□□□□□ -1.63
BRCA1-204ENST00000412061 GUCY1B2O75343 617 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 TAF5LO75529 589 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 RPP40O75818 363 aaKnown RBP4.87□□□□□ -1.63
BRCA1-204ENST00000412061 SPDEFO95238 335 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 CYP21A2P08686 494 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 SPARCP09486 303 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 HGFP14210 728 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 ZNF20P17024 532 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 GCH1P30793 250 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 UQCRC1P31930 480 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 PTGS2P35354 604 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 MSH2P43246 934 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 MTHFSP49914 203 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 UBXN2AP68543 259 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 ITIH3Q06033 890 aa4.87□□□□□ -1.63
BRCA1-204ENST00000412061 AIMP1Q12904 312 aaKnown RBP4.87□□□□□ -1.63
BRCA1-204ENST00000412061 PKN2Q16513 984 aaKnown RBP4.87□□□□□ -1.63
BRCA1-204ENST00000412061 PRICKLE4Q2TBC4 344 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms