RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MOCOSQ96EN8 888 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 PGLYRP2Q96PD5 576 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 MIPEPQ99797 713 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 ZNF358Q9NW07 568 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 NDUFA13Q9P0J0 144 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 NENFQ9UMX5 172 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 ANGPTL3Q9Y5C1 460 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 BCORQ6W2J9 1755 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TFE3P19532 575 aaPredicted RBP12.25□□□□□ -0.45
HMGB1-206ENST00000405805 SULT1E1P49888 294 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 JADE1Q6IE81 842 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 SERPINI1Q99574 410 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 LPIN3Q9BQK8 851 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 TEKT2Q9UIF3 430 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 DAPK2Q9UIK4 370 aa12.25□□□□□ -0.45
HMGB1-206ENST00000405805 SIGLEC16A6NMB1 481 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 TPP1O14773 563 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 DDNO94850 711 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ALADP13716 330 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 FGFR3P22607 806 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 KIZQ2M2Z5 673 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 TRMT5Q32P41 509 aaKnown RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 BOLA3Q53S33 107 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 TLDC1Q6P9B6 456 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 COLGALT1Q8NBJ5 622 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 FBXO27Q8NI29 283 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 TRPM4Q8TD43 1214 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ATXN3LQ9H3M9 355 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 PTPRHQ9HD43 1115 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ATRNL1Q5VV63 1379 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 RNF103-CHMP3A0A140T963 221 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 MAFGO15525 162 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 EIF4BP23588 611 aaKnown RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 NRF1Q16656 503 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 PERM1Q5SV97 790 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 MOB2Q70IA6 237 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 STRA8Q7Z7C7 330 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 CMTM5Q96DZ9 223 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ANKRD27Q96NW4 1050 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 SEMA6AQ9H2E6 1030 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 CAB39LQ9H9S4 337 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 PPCSQ9HAB8 311 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 AASDHPPTQ9NRN7 309 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 RNF181Q9P0P0 153 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ARHGAP28Q9P2N2 729 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 LIN7AO14910 233 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 PHGDHO43175 533 aaKnown RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 LSM8O95777 96 aaKnown RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 T-ENOLP0DO92 83 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 RARBP10826 455 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 RGS2P41220 211 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 PLK1P53350 603 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ARPP19P56211 112 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 C21orf59P57076 290 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ACVR2BQ13705 512 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 KIF19Q2TAC6 998 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 LIN52Q52LA3 116 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ACAD11Q709F0 780 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 TAS2R42Q7RTR8 314 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 DIS3LQ8TF46 1054 aaKnown RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 WDR55Q9H6Y2 383 aaPredicted RBP12.24□□□□□ -0.45
HMGB1-206ENST00000405805 EPS15L1Q9UBC2 864 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 ITGB1BP2Q9UKP3 347 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 AP4E1Q9UPM8 1137 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 WDR37Q9Y2I8 494 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 CNTNAP1P78357 1384 aa12.24□□□□□ -0.45
HMGB1-206ENST00000405805 MYO18AQ92614 2054 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 C19orf81C9J6K1 198 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 STRNO43815 780 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 SEMA3DO95025 777 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 KLHL2O95198 593 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 ESRRBO95718 433 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CCNB1P14635 433 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CPA3P15088 417 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 S100A1P23297 94 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 ACAT1P24752 427 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 KLF1Q13351 362 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 MXD4Q14582 209 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 MYBPC3Q14896 1274 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CNPY1Q3B7I2 92 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 RARS2Q5T160 578 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 ADGRD1Q6QNK2 874 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 MPZL3Q6UWV2 235 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 FAM183BPQ6ZVS7 135 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 BANPQ8N9N5 519 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CDRT15Q96T59 188 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 SNRNP25Q9BV90 132 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 COPS7BQ9H9Q2 264 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 PRKAG3Q9UGI9 489 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 SNCAIPQ9Y6H5 919 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 CSPG5O95196 566 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 ITGA2BP08514 1039 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 ZBTB48P10074 688 aaPredicted RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 UBA1P22314 1058 aaKnown RBP12.23□□□□□ -0.45
HMGB1-206ENST00000405805 AP3M2P53677 418 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 PCSK7Q16549 785 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 SPDYAQ5MJ70 313 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 TMEM63BQ5T3F8 832 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 IER5Q5VY09 327 aa12.23□□□□□ -0.45
HMGB1-206ENST00000405805 LRRC8EQ6NSJ5 796 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms