RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CDKN2BP42772 138 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 AMPD2Q01433 879 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 TFDP3Q5H9I0 405 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 CCDC181Q5TID7 509 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 FBXL22Q6P050 247 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 RFWD3Q6PCD5 774 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 FAM71BQ8TC56 605 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 E2F7Q96AV8 911 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 TBC1D31Q96DN5 1066 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 RPRD1AQ96P16 312 aaPredicted RBP18.66■□□□□ 0.58
SDC1-203ENST00000403076 CSPG4P5Q96PW8 444 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 PRMT1Q99873 361 aaKnown RBP18.66■□□□□ 0.58
SDC1-203ENST00000403076 ZNF670Q9BS34 389 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 OSBPL8Q9BZF1 889 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 TRPV4Q9HBA0 871 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 RCOR3Q9P2K3 495 aaPredicted RBP18.66■□□□□ 0.58
SDC1-203ENST00000403076 TBC1D14Q9P2M4 693 aa18.66■□□□□ 0.58
SDC1-203ENST00000403076 HEPACAM2A8MVW5 462 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 SLC9A3R1O14745 358 aaPredicted RBP18.65■□□□□ 0.58
SDC1-203ENST00000403076 KRT10P13645 584 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 EPHB2P29323 1055 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 SLC6A4P31645 630 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 CHKAP35790 457 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 HCAR3P49019 387 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 NRG1Q02297 640 aaPredicted RBP18.65■□□□□ 0.58
SDC1-203ENST00000403076 SEMA3BQ13214 749 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 FAM133BQ5BKY9 247 aaKnown RBP18.65■□□□□ 0.58
SDC1-203ENST00000403076 ANKRD20A8PQ5CZ79 823 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 TANGO2Q6ICL3 276 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 RFX8Q6ZV50 586 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 BPIFB1Q8TDL5 484 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 RSPRY1Q96DX4 576 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 RNF157Q96PX1 679 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 OBP2AQ9NY56 170 aa18.65■□□□□ 0.58
SDC1-203ENST00000403076 hCG_1818297A0A087WSY0 165 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 CES2O00748 559 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 FGGP02679 453 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 AMPD1P23109 780 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 IL4RP24394 825 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 HTR7P34969 479 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 VCPP55072 806 aaKnown RBP18.64■□□□□ 0.58
SDC1-203ENST00000403076 TFDP2Q14188 446 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 PPP2R5EQ16537 467 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 LONRF2Q1L5Z9 754 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 LEXMQ3ZCV2 418 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 RABGAP1LQ5R372 815 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 ANKS1BQ7Z6G8 1248 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 VSIG1Q86XK7 387 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 YAF2Q8IY57 180 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 RIN3Q8TB24 985 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 TSC1Q92574 1164 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 MS4A14Q96JA4 679 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 THG1LQ9NWX6 298 aaKnown RBP18.64■□□□□ 0.58
SDC1-203ENST00000403076 STOML2Q9UJZ1 356 aa18.64■□□□□ 0.58
SDC1-203ENST00000403076 HELZP42694 1942 aaKnown RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 TYW5A2RUC4 315 aaKnown RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 ZNF487B1APH4 448 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 PAFAH1B1P43034 410 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 IFNAR2P48551 515 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 DYNLT1P63172 113 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 PTCRAQ6ISU1 281 aaPredicted RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 MTSS1LQ765P7 747 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 TDRD5Q8NAT2 981 aaKnown RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 TMA16Q96EY4 203 aaKnown RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 LRRC3BQ96PB8 259 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 KXD1Q9BQD3 176 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 ZYG11BQ9C0D3 744 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 CATSPERBQ9H7T0 1116 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 DUS2Q9NX74 493 aaKnown RBP18.64■□□□□ 0.57
SDC1-203ENST00000403076 MPP6Q9NZW5 540 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 CDC23Q9UJX2 597 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 FAM50BQ9Y247 325 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 NR2E1Q9Y466 385 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 WNT6Q9Y6F9 365 aa18.64■□□□□ 0.57
SDC1-203ENST00000403076 PGRMC1O00264 195 aaKnown RBP18.63■□□□□ 0.57
SDC1-203ENST00000403076 CST8O60676 142 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 TJP3O95049 919 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 ERCC2P18074 760 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 FCARP24071 287 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 PTPN7P35236 360 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 TUBB2AQ13885 445 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 TAZQ16635 292 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 MANEALQ5VSG8 457 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 PARM1Q6UWI2 310 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 TPGS1Q6ZTW0 290 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 ADAT2Q7Z6V5 191 aaKnown RBP18.63■□□□□ 0.57
SDC1-203ENST00000403076 SLC13A5Q86YT5 568 aaPredicted RBP18.63■□□□□ 0.57
SDC1-203ENST00000403076 CFAP52Q8N1V2 620 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 RASGEF1CQ8N431 466 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 CPXM2Q8N436 756 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 PCDH19Q8TAB3 1148 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 IGSF8Q969P0 613 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 OTUB2Q96DC9 234 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 RPGRIP1Q96KN7 1286 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 NAP1L3Q99457 506 aaPredicted RBP18.63■□□□□ 0.57
SDC1-203ENST00000403076 TUBB2BQ9BVA1 445 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 PHF7Q9BWX1 381 aaPredicted RBP18.63■□□□□ 0.57
SDC1-203ENST00000403076 LINC00597Q9H2U6 94 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 ARHGEF4Q9NR80 690 aa18.63■□□□□ 0.57
SDC1-203ENST00000403076 EPS15L1Q9UBC2 864 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms