RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 KCTD21Q4G0X4 260 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 SPDYCQ5MJ68 293 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 SWT1Q5T5J6 900 aaKnown RBP11.02□□□□□ -0.65
CCDC40-204ENST00000397545 FAM117BQ6P1L5 589 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 METTL7BQ6UX53 244 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 CRELD2Q6UXH1 353 aaPredicted RBP11.02□□□□□ -0.65
CCDC40-204ENST00000397545 TFAP2DQ7Z6R9 452 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 ALYREFQ86V81 257 aaKnown RBP11.02□□□□□ -0.65
CCDC40-204ENST00000397545 NT5MQ9NPB1 228 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 SLC8A2Q9UPR5 921 aa11.02□□□□□ -0.65
CCDC40-204ENST00000397545 ZNF197O14709 1029 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 INPP4BO15327 924 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 USP1O94782 785 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 EGFRP00533 1210 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ETS2P15036 469 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 EIF4BP23588 611 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 NEK2P51955 445 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 NOMO3P69849 1222 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 UBAP2LQ14157 1087 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 AASDHQ4L235 1098 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZC3H12BQ5HYM0 836 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 OR6Y1Q8NGX8 325 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 PIWIL2Q8TC59 973 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SLC2A14Q8TDB8 520 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZC3H15Q8WU90 426 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 CRYGNQ8WXF5 182 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SH3KBP1Q96B97 665 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 BRD8Q9H0E9 1235 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 CYP3A43Q9HB55 503 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 LRRC4CQ9HCJ2 640 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TMEM161AQ9NX61 479 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 CHCHD3Q9NX63 227 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 AJAP1Q9UKB5 411 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 E7ENQ6 273 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 H3BRB1 525 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 FSTL1Q12841 308 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SLC1A5Q15758 541 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 FBXO47Q5MNV8 452 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TBCELQ5QJ74 424 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 RNF43Q68DV7 783 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 P3H2Q8IVL5 708 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TNS4Q8IZW8 715 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 LRRC57Q8N9N7 239 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 JADE3Q92613 823 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 GRIP2Q9C0E4 1043 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 RERGLQ9H628 205 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TUT1Q9H6E5 874 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 NDUFA13Q9P0J0 144 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SHOX2O60902 331 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 NPM3O75607 178 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 GJB1P08034 283 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ATP4AP20648 1035 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SERPINB10P48595 397 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 PWP1Q13610 501 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TRIM16LQ309B1 348 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZACNQ401N2 412 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 PLEKHA7Q6IQ23 1121 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 LPCAT2Q7L5N7 544 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 KCNMB4Q86W47 210 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ALLCQ8N6M5 410 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 OR9Q1Q8NGQ5 310 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 COL20A1Q9P218 1284 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ASTN2O75129 1339 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SRRM3A6NNA2 597 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 TPP1O14773 563 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 EDF1O60869 148 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 DDHD2O94830 711 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 FAM58BPP0C7Q3 252 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ALADP13716 330 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ATP6V1B2P21281 511 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 GEMP55040 296 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 YWHAZP63104 245 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 C16orf72Q14CZ0 275 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZC3H12AQ5D1E8 599 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZNF470Q6ECI4 717 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 DNAJC14Q6Y2X3 702 aaPredicted RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ECHDC2Q86YB7 292 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 SLC9A9Q8IVB4 645 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 FAM13CQ8NE31 585 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 GPRC5AQ8NFJ5 357 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 DDI1Q8WTU0 396 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 GFM2Q969S9 779 aaKnown RBP11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ZNF333Q96JL9 665 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 NRDE2Q9H7Z3 1164 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 RIC8BQ9NVN3 520 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 RNF112Q9ULX5 631 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 HES2Q9Y543 173 aa11.01□□□□□ -0.65
CCDC40-204ENST00000397545 ATRNL1Q5VV63 1379 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 UTRNP46939 3433 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 ME2P23368 584 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 CNTFP26441 200 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 HIRAP54198 1017 aaPredicted RBP11□□□□□ -0.65
CCDC40-204ENST00000397545 PPIDQ08752 370 aaKnown RBP11□□□□□ -0.65
CCDC40-204ENST00000397545 XRCC4Q13426 336 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 MRNIPQ6NTE8 343 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 PPP1R3FQ6ZSY5 799 aaPredicted RBP11□□□□□ -0.65
CCDC40-204ENST00000397545 ILDR2Q71H61 639 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 RRM2BQ7LG56 351 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 TMC7Q7Z402 723 aa11□□□□□ -0.65
CCDC40-204ENST00000397545 HS6ST3Q8IZP7 471 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms