RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 BTBD9Q96Q07 612 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 SLC38A2Q96QD8 506 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 PLEKHF1Q96S99 279 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 TEX13BQ9BXU2 312 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 L1RE1Q9UN81 338 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 A0A1W2PQJ5 194 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 LTFP02788 710 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 CDC42P60953 191 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 CYB5R4Q7L1T6 521 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 ZNF276Q8N554 614 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 OR2L5Q8NG80 312 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 TMEM143Q96AN5 459 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 ATXN2Q99700 1313 aaKnown RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 RNASEH1O60930 286 aaKnown RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 PHKG2P15735 406 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 GPR15P49685 360 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 CDC42EP1Q00587 391 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 PROSER3Q2NL68 480 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 RABL6Q3YEC7 729 aaPredicted RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 DALRD3Q5D0E6 543 aaKnown RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 USPL1Q5W0Q7 1092 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 KCNV1Q6PIU1 500 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 PACS1Q6VY07 963 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 FAM126BQ8IXS8 530 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 HNRNPLLQ8WVV9 542 aaKnown RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 EMILIN2Q9BXX0 1053 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 AKAP7Q9P0M2 348 aaPredicted RBP10.54□□□□□ -0.72
COL4A4-201ENST00000396625 RP1P56715 2156 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 LOC110117498-PIK3R3F6TDL0 507 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 ODC1P11926 461 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 SLC15A2Q16348 729 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 HLA-DQA1Q5Y7H0 255 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 OR6J1Q8NGC5 347 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 REEP2Q9BRK0 252 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 DPY30Q9C005 99 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 EHD1Q9H4M9 534 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 TMBIM4Q9HC24 238 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 NUP50Q9UKX7 468 aa10.54□□□□□ -0.72
COL4A4-201ENST00000396625 PGK1P00558 417 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ASS1P00966 412 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 PRLP01236 227 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FAUP35544 74 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 MEIOBQ8N635 442 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 TDRD1Q9BXT4 1180 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 TRIM9Q9C026 710 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ERGIC3Q9Y282 383 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ERBB3P21860 1342 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 IFRD1O00458 451 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 SKIV2L2P42285 1042 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 NPY2RP49146 381 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 GEMP55040 296 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FAXCQ5TGI0 409 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FAM20CQ8IXL6 584 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 SUN5Q8TC36 379 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ZHX1-C8orf76Q96EF9 292 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 CKLFQ9UBR5 152 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 DRG1Q9Y295 367 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FARP2O94887 1054 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 TTKP33981 857 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 BICRALQ6AI39 1079 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 TMPRSS6Q8IU80 811 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 CCNJLQ8IV13 435 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ZNF615Q8N8J6 731 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 WRNIP1Q96S55 665 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 WDCPQ9H6R7 721 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 EMC3Q9P0I2 261 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 CIDEBQ9UHD4 219 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 KCNH1O95259 989 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ZNF177Q13360 481 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 NT5DC3Q86UY8 548 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 CPVLQ9H3G5 476 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 GPAMQ9HCL2 828 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ABI2Q9NYB9 513 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 NR3C2P08235 984 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 MSLNQ13421 630 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 C1orf189Q5VU69 101 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 PIK3C3Q8NEB9 887 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 RSPH9Q9H1X1 276 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 A1CFQ9NQ94 594 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FAM50BQ9Y247 325 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 SPAG17Q6Q759 2223 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FOXN1O15353 648 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 OR7A10O76100 309 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ITGALP20701 1170 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 HSD3B2P26439 372 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 TYSND1Q2T9J0 566 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ARMC8Q8IUR7 673 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 COLGALT2Q8IYK4 626 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 NEK7Q8TDX7 302 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ACTRT2Q8TDY3 377 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 ZSWIM1Q9BR11 485 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 AIFM2Q9BRQ8 373 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 KCNH4Q9UQ05 1017 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 LOC102724428A0A0B4J2F2 783 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 FOXN3O00409 490 aaPredicted RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 SIK1P57059 783 aa10.53□□□□□ -0.72
COL4A4-201ENST00000396625 MRPS22P82650 360 aaKnown RBP10.53□□□□□ -0.72
COL4A4-201ENST00000396625 MTAPQ13126 283 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms