RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RBBP5Q15291 538 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 AP1ARQ63HQ0 302 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PDPK2PQ6A1A2 396 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 CES3Q6UWW8 571 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 HIPK4Q8NE63 616 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ACTRT2Q8TDY3 377 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 CDKL2Q92772 493 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ATP2A3Q93084 1043 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 KIF12Q96FN5 646 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 OLFM3Q96PB7 478 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 DNAJC28Q9NX36 388 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ZDHHC7Q9NXF8 308 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 GTF2IRD1Q9UHL9 959 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 USP3Q9Y6I4 520 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ZMPSTE24O75844 475 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 VTNP04004 478 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ERVK-10P10266 1014 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 INSRRP14616 1297 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ALOX15P16050 662 aaPredicted RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ITGAXP20702 1163 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 SLC26A2P50443 739 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ABCE1P61221 599 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ITGA9Q13797 1035 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 DLK2Q6UY11 383 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 FRMD7Q6ZUT3 714 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 HPS6Q86YV9 775 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 TRPM4Q8TD43 1214 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PPP4R1Q8TF05 950 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 AZIN2Q96A70 460 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 OXCT2Q9BYC2 517 aaPredicted RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 TRIM4Q9C037 500 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PDGFCQ9NRA1 345 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 POMPQ9Y244 141 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 TOMM70O94826 608 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 RALBP11234 206 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 NCF2P19878 526 aaPredicted RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 GRK2P25098 689 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 MLH1P40692 756 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 DALRD3Q5D0E6 543 aaKnown RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 CMC1Q7Z7K0 106 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 APOBEC3FQ8IUX4 373 aaKnown RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 DEFB107AQ8IZN7 70 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TNS4Q8IZW8 715 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TTC39CQ8N584 583 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 C7orf31Q8N865 590 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 AFG1LQ8WV93 481 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 DPEP3Q9H4B8 488 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 SYBUQ9NX95 663 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 GGA3Q9NZ52 723 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TRIP11Q15643 1979 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TNS1Q9HBL0 1735 aaKnown RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 MYO18AQ92614 2054 aaKnown RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 PCNTO95613 3336 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 USP2O75604 605 aaPredicted RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 F7P08709 466 aaPredicted RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 CD1EP15812 388 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 DESP17661 470 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 PGAM1P18669 254 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 PEX2P28328 305 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TYK2P29597 1187 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 GSTT1P30711 240 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 FDFT1P37268 417 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 HARS2P49590 506 aaKnown RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 CDK7P50613 346 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 AQP4P55087 323 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 POU5F1BQ06416 359 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 USP4Q13107 963 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 VGLL4Q14135 290 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 CFAP157Q5JU67 520 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 TCHHL1Q5QJ38 904 aaPredicted RBP13.05□□□□□ -0.32
SHMT1-205ENST00000395684 ACAD11Q709F0 780 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 MAN1C1Q9NR34 630 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 AKT3Q9Y243 479 aa13.05□□□□□ -0.32
SHMT1-205ENST00000395684 DCXO43602 365 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 ZBTB14O43829 449 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 MFSD11O43934 449 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 SETSIPP0DME0 302 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 TXNP10599 105 aaKnown RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 LCP1P13796 627 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 OLIG2Q13516 323 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 INSCQ1MX18 579 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 CNPY1Q3B7I2 92 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 SLC26A9Q7LBE3 791 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 ZDHHC17Q8IUH5 632 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 PLD6Q8N2A8 252 aaKnown RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 GDPD5Q8WTR4 605 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 CMTM5Q96DZ9 223 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 P2RY11Q96G91 374 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 SPATA16Q9BXB7 569 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 FAM124BQ9H5Z6 455 aaPredicted RBP13.04□□□□□ -0.32
SHMT1-205ENST00000395684 TBC1D30Q9Y2I9 924 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 RNF103O00237 685 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 CNMDO75829 334 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 MYL4P12829 197 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 GTF2A2P52657 109 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 DLG1Q12959 904 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 LIN52Q52LA3 116 aa13.04□□□□□ -0.32
SHMT1-205ENST00000395684 RASIP1Q5U651 963 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms