RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 USP46P62068 366 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ERAP2Q6P179 960 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 PTAR1Q7Z6K3 402 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 RUSC1Q9BVN2 902 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 EPB41L4BQ9H329 900 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 A1CFQ9NQ94 594 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TRPC4Q9UBN4 977 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TNFRSF8P28908 595 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 NOS3P29474 1203 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 GP5P40197 560 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 MSLNQ13421 630 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 VEPH1Q14D04 833 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 EIF3MQ7L2H7 374 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ULK2Q8IYT8 1036 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 FAM172AQ8WUF8 416 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 FICDQ9BVA6 458 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TOR4AQ9NXH8 423 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF221Q9UK13 617 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 BCLAF3A2AJT9 711 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 HAT1O14929 419 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 SNAP91O60641 907 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 WFS1O76024 890 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TRIM32Q13049 653 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ATF7IP2Q5U623 682 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TTC23Q5W5X9 447 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 NT5DC3Q86UY8 548 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 REEP1Q9H902 201 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 MTMR4Q9NYA4 1195 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF224Q9NZL3 707 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 SH3BP4Q9P0V3 963 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 DRG1Q9Y295 367 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TSPAN4O14817 238 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 NADKO95544 446 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CYBBP04839 570 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 ITGB3P05106 788 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 COX4I1P13073 169 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 NEK3P51956 506 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PHKG1Q16816 387 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 KYAT3Q6YP21 454 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PROSER1Q86XN7 944 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 KBTBD8Q8NFY9 601 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 DDIT4Q9NX09 232 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CMTM6Q9NX76 183 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 INVSQ9Y283 1065 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CCDC162PA2VCL2 907 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PDE2AO00408 941 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 ZBTB11O95625 1053 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 AUHQ13825 339 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 RRP1BQ14684 758 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 INO80DQ53TQ3 878 aaPredicted RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PMF1Q6P1K2 205 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 AMIGO2Q86SJ2 522 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SLCO6A1Q86UG4 719 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 FLAD1Q8NFF5 587 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 ACAD9Q9H845 621 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 MAP3K20Q9NYL2 800 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 A0A0U1RQJ8 604 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 LTFP02788 710 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 BCAP31P51572 246 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 RPS6KA3P51812 740 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SLC25A24Q6NUK1 477 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 NAT14Q8WUY8 206 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PRELID1Q9Y255 219 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TMEM114B3SHH9 223 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 UBE2Q2LH0YL09 131 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SLC37A4O43826 429 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PABPC1P11940 636 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 NPR3P17342 541 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 LPCAT4Q643R3 524 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 KLHL24Q6TFL4 600 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TARS2Q9BW92 718 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 POMKQ9H5K3 350 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 ADPRHL2Q9NX46 363 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SYNCRIPO60506 623 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 STX11O75558 287 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PTSQ03393 145 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 NEK5Q6P3R8 708 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CES3Q6UWW8 571 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TMC7Q7Z402 723 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PDCD10Q9BUL8 212 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 DARSP14868 501 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 MGAT1P26572 445 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 GSTM5P46439 218 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 PLK1P53350 603 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TNK2Q07912 1038 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 IL18R1Q13478 541 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SLFN11Q7Z7L1 901 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 TMEM132CQ8N3T6 1108 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 POP1Q99575 1024 aaKnown RBP12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CPNE1Q99829 537 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 CCDC28BQ9BUN5 200 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 SORCS3Q9UPU3 1222 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 GMPPBQ9Y5P6 360 aa12.09□□□□□ -0.47
SYNPO-202ENST00000394243 C15orf38-AP3S2A0A0A6YYH1 394 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 BIRC5O15392 142 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 PIGNO95427 931 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 GLP2RO95838 553 aa12.08□□□□□ -0.48
SYNPO-202ENST00000394243 MYBL2P10244 700 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms