RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GDF6Q6KF10 455 aaPredicted RBP13.77□□□□□ -0.21
CCDC3-202ENST00000378839 C16orf46Q6P387 395 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 ALYREFQ86V81 257 aaKnown RBP13.77□□□□□ -0.21
CCDC3-202ENST00000378839 FAM13CQ8NE31 585 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 USP12O75317 370 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 DAOAP59103 153 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 DEUP1Q05D60 604 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 PAFAH1B3Q15102 231 aaKnown RBP13.77□□□□□ -0.21
CCDC3-202ENST00000378839 FYB2Q5VWT5 728 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 LRRC8BQ6P9F7 803 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 ZCCHC23Q6ZST2 131 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 NDUFAF2Q8N183 169 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 CCNYQ8ND76 341 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 EDEM1Q92611 657 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 AGO3Q9H9G7 860 aaKnown RBP13.77□□□□□ -0.21
CCDC3-202ENST00000378839 SIRPGQ9P1W8 387 aa13.77□□□□□ -0.21
CCDC3-202ENST00000378839 CASTOR2A6NHX0 329 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ALDH3A1P30838 453 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ADRA1BP35368 520 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 IRX4P78413 519 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 RFWD3Q6PCD5 774 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 AGMOQ6ZNB7 445 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 FAM35AQ86V20 835 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 LONP2Q86WA8 852 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ZNF398Q8TD17 642 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 TRIM55Q9BYV6 548 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 LRRC4Q9HBW1 653 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 XAB2Q9HCS7 855 aaKnown RBP13.76□□□□□ -0.21
CCDC3-202ENST00000378839 FAM105AQ9NUU6 356 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 RCOR3Q9P2K3 495 aaPredicted RBP13.76□□□□□ -0.21
CCDC3-202ENST00000378839 MCM8Q9UJA3 840 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 HACD1B0YJ81 288 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 XPOTO43592 962 aaKnown RBP13.76□□□□□ -0.21
CCDC3-202ENST00000378839 MYL2P10916 166 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 DESP17661 470 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ERCC2P18074 760 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 CLNS1AP54105 237 aaKnown RBP13.76□□□□□ -0.21
CCDC3-202ENST00000378839 PARP6Q2NL67 630 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 PAN2Q504Q3 1202 aaKnown RBP13.76□□□□□ -0.21
CCDC3-202ENST00000378839 RAB41Q5JT25 222 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 C17orf99Q6UX52 265 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 CXCL17Q6UXB2 119 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 C4orf22Q6V702 233 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 SIX6OS1Q8N1H7 587 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 NME8Q8N427 588 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 AP5M1Q9H0R1 490 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 EBF2Q9HAK2 575 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 RRAGCQ9HB90 399 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ARMCX1Q9P291 453 aa13.76□□□□□ -0.21
CCDC3-202ENST00000378839 ARL5CA6NH57 179 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 F8W810 466 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 EEF2KO00418 725 aaKnown RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TRAFD1O14545 582 aaPredicted RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 KLF11O14901 512 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 AP1G2O75843 785 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 UPP2O95045 317 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TGDSO95455 350 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 GSTA2P09210 222 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 FAM200BP0CF97 657 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TROVE2P10155 538 aaKnown RBP eCLIP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CD68P34810 354 aaPredicted RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ARFIP2P53365 341 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 MRPS6P82932 125 aaKnown RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 OCRLQ01968 901 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CRYMQ14894 314 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CHI3L2Q15782 390 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PPM1JQ5JR12 505 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CASC4Q6P4E1 433 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CD300LGQ6UXG3 332 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 SYT15Q9BQS2 421 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TMLHEQ9NVH6 421 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 MKS1Q9NXB0 559 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 MRPL42Q9Y6G3 142 aaKnown RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 E2F8A0AVK6 867 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 SDR42E2A6NKP2 422 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 MGEA5O60502 916 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ANP32DO95626 131 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ERVK-10P10266 1014 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PTPN3P26045 913 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ARRB2P32121 409 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CRHR1P34998 444 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PGFP49763 221 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 SCNN1GP51170 649 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 CDK16Q00536 496 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TIGD5Q53EQ6 642 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TLDC1Q6P9B6 456 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PSTKQ8IV42 348 aaKnown RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 FBXO27Q8NI29 283 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 INPP5DQ92835 1189 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ZNF778Q96MU6 729 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 AGAP3Q96P47 875 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 TMEM209Q96SK2 561 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 H3BRJ5 948 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PGK1P00558 417 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 IL1BP01584 269 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 ZBTB17Q13105 803 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PDE1CQ14123 709 aaPredicted RBP13.75□□□□□ -0.21
CCDC3-202ENST00000378839 PACS1Q6VY07 963 aa13.75□□□□□ -0.21
CCDC3-202ENST00000378839 RINLQ6ZS11 566 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms