RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 UCKL1Q9NWZ5 548 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 HSPBP1Q9NZL4 362 aa8.9□□□□□ -0.98
HMGB1P39-201ENST00000366304 ITPR2Q14571 2701 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 LY6G6EA0A0G2JKS1 128 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 A0A1B0GVM2 712 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 TLR4O00206 839 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 OPA1O60313 960 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 CSO75390 466 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRPF6O94906 941 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 GCNT3O95395 438 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 LDHAP00338 332 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 TNNC2P02585 160 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 HOXD9P28356 352 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 CD38P28907 300 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 CORO1AP31146 461 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 ABCD1P33897 745 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PLA2G4AP47712 749 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 SGSHP51688 502 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 ERVPABLB-1P60509 514 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRR20EP86478 221 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRR20CP86479 221 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRR20DP86480 221 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRR20BP86481 221 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PRR20AP86496 221 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 SRSF6Q13247 344 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLN3Q13286 438 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 EIF4HQ15056 248 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 FNDC3BQ53EP0 1204 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 C10orf120Q5SQS8 335 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 KLHDC10Q6PID8 442 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF574Q6ZN55 896 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 ACOT1Q86TX2 421 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 GPD1LQ8N335 351 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 C12orf29Q8N999 325 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 WFDC5Q8TCV5 224 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 SLC2A14Q8TDB8 520 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 UCMAQ8WVF2 138 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 LARP4BQ92615 738 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 MYO19Q96H55 970 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 MED10Q9BTT4 135 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 DPH1Q9BZG8 443 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM117AQ9C073 453 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 NEUROG2Q9H2A3 272 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 PABPC3Q9H361 631 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 POLR1BQ9H9Y6 1135 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 GDF3Q9NR23 364 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 TLR8Q9NR97 1041 aaKnown RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 AASDHPPTQ9NRN7 309 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 COMMD8Q9NX08 183 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 SCML2Q9UQR0 700 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 U3KQA8 63 aa8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 COL27A1Q8IZC6 1860 aaPredicted RBP8.89□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLEC18AA5D8T8 446 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 LCE2BO14633 110 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM163BP0C2L3 166 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 PPP2CBP62714 309 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 PPP2CAP67775 309 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZBTB16Q05516 673 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 UBAP2LQ14157 1087 aaKnown RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 ARL13BQ3SXY8 428 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 ARL6IP4Q66PJ3 421 aaKnown RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLEC18BQ6UXF7 455 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 SCARA5Q6ZMJ2 495 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 KIAA0907Q7Z7F0 614 aaPredicted RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 WDR49Q8IV35 697 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 DENND1CQ8IV53 801 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM217AQ8IXS0 508 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 AADATQ8N5Z0 425 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 CLEC18CQ8NCF0 446 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 PLEKHO2Q8TD55 490 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 HPS3Q969F9 1004 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 CALML4Q96GE6 196 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 EPSTI1Q96J88 318 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 LLPHQ9BRT6 129 aaKnown RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 RSPH9Q9H1X1 276 aaPredicted RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM49BQ9NUQ9 324 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 ABCB8Q9NUT2 735 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 FBXL12Q9NXK8 326 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 SATB2Q9UPW6 733 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 CA5BQ9Y2D0 317 aa8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 HEMK1Q9Y5R4 338 aaPredicted RBP8.88□□□□□ -0.99
HMGB1P39-201ENST00000366304 CENPEQ02224 2701 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 A0A1W2PP55 124 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ZNF233A6NK53 670 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CFAP99D6REC4 459 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 MID1O15344 667 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 YKT6O15498 198 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 SLC26A4O43511 780 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 TIMM44O43615 452 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 SIN3BO75182 1162 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 AFPP02771 609 aaKnown RBP8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 DNTTP04053 509 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 FAM87AP0C7U9 286 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 DLATP10515 647 aaKnown RBP8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CR2P20023 1033 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CD70P32970 193 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 UBA7P41226 1012 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 ARRB1P49407 418 aaPredicted RBP8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 CASP4P49662 377 aa8.87□□□□□ -0.99
HMGB1P39-201ENST00000366304 METAP1P53582 386 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms