RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 USP2O75604 605 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 RALBP11234 206 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 FGF3P11487 239 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 ARRB2P32121 409 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 CCR10P46092 362 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 NXNQ6DKJ4 435 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 PLD6Q8N2A8 252 aaKnown RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 OR52K1Q8NGK4 314 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF669Q96BR6 464 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 GOLGA2P5Q9HBQ8 144 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 FIS1Q9Y3D6 152 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 NME7Q9Y5B8 376 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 PLIN3O60664 434 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 PEX2P28328 305 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 GLRBP48167 497 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 SULT1E1P49888 294 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 SERPINB9P50453 376 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 TNFAIP2Q03169 654 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 MBLAC2Q68D91 279 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 MARK4Q96L34 752 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 ZMAT2Q96NC0 199 aaKnown RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 AGAP2Q99490 1192 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 SH3GL3Q99963 347 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 ERAP1Q9NZ08 941 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 KLHL8Q9P2G9 620 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 RNASEH1O60930 286 aaKnown RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 SNNO75324 88 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 RPS12P25398 132 aaKnown RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 IDH3AP50213 366 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 WASHC5Q12768 1159 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 IFRD2Q12894 506 aaPredicted RBP12.47□□□□□ -0.41
CLIP3-201ENST00000360535 PCLAFQ15004 111 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 SFT2D3Q587I9 215 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 AFG1LQ8WV93 481 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 P2RY11Q96G91 374 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF670Q9BS34 389 aa12.47□□□□□ -0.41
CLIP3-201ENST00000360535 CLDN5O00501 218 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 C22orf31O95567 290 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 MCF2P10911 925 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 TCN1P20061 433 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ACAT1P24752 427 aaKnown RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ATICP31939 592 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 AVPR1AP37288 418 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 CCNFP41002 786 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 IRF9Q00978 393 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 NCBP2-AS2Q69YL0 99 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 FRMD7Q6ZUT3 714 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 MAVSQ7Z434 540 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 CTU1Q7Z7A3 348 aaKnown RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 MYLK4Q86YV6 388 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 APOBEC3FQ8IUX4 373 aaKnown RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 DEFB106AQ8N104 65 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ZNF781Q8N8C0 355 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 CXorf38Q8TB03 319 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 SLC2A14Q8TDB8 520 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ASB7Q9H672 318 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 WDR55Q9H6Y2 383 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 PPME1Q9Y570 386 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 AK5Q9Y6K8 562 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 A0A1B0GVG6 124 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 CCDC160A6NGH7 325 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ADM5C9JUS6 153 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 SOCS7O14512 581 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 GAS2O43903 313 aaKnown RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 GLRA3O75311 464 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 RAG1P15918 1043 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 EDNRBP24530 442 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 AQP4P55087 323 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 HSP90AA5PQ58FG0 334 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 PLPPR4Q7Z2D5 763 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 STRA8Q7Z7C7 330 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 SDCCAG8Q86SQ7 713 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 GDPD5Q8WTR4 605 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 GATA6Q92908 595 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 GCNAQ96QF7 691 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 CAMKK2Q96RR4 588 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 FRMD8Q9BZ67 464 aaPredicted RBP12.46□□□□□ -0.41
CLIP3-201ENST00000360535 PRDM12Q9H4Q4 367 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 S100A14Q9HCY8 104 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 ADAMTS6Q9UKP5 1117 aa12.46□□□□□ -0.41
CLIP3-201ENST00000360535 LCTP09848 1927 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 CPA3P15088 417 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 BAG6P46379 1132 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 TBL3Q12788 808 aaKnown RBP12.46□□□□□ -0.42
CLIP3-201ENST00000360535 DCLK2Q8N568 766 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 MCUQ8NE86 351 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 CACNG4Q9UBN1 327 aa12.46□□□□□ -0.42
CLIP3-201ENST00000360535 ANK1P16157 1881 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 PARP14Q460N5 1801 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 A0A0A0MRY4 1105 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 F8W8V4 182 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 AHCYL1O43865 530 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 GCATO75600 419 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 GSRP00390 522 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 AMHP03971 560 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 SERPINE1P05121 402 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 FESP07332 822 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 CPOXP36551 454 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 NDUFV1P49821 464 aa12.45□□□□□ -0.42
CLIP3-201ENST00000360535 RBBP5Q15291 538 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms