RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 EIF3LQ9Y262 564 aaKnown RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ATXN2Q99700 1313 aaKnown RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 DYRK3O43781 588 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 VDRP11473 427 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CCNG1P51959 295 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 DGKEP52429 567 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 C2orf27AQ580R0 203 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GLMNQ92990 594 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 MTBPQ96DY7 904 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 HGH1Q9BTY7 390 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 PAK5Q9P286 719 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ARMCX1Q9P291 453 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 KLQ9UEF7 1012 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CNOT6Q9ULM6 557 aaKnown RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 SNX12Q9UMY4 172 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TMX2Q9Y320 296 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TRIM3O75382 744 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GEMP55040 296 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ENOSF1Q7L5Y1 443 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ATAD1Q8NBU5 361 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 REPS2Q8NFH8 660 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 PCDHA11Q9Y5I1 949 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 F8VP50 259 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 SLITRK3O94933 977 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 RFC5P40937 340 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GRIK3Q13003 919 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CCL14Q16627 93 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FAM83EQ2M2I3 478 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FAM171BQ6P995 826 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 EPHX4Q8IUS5 362 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 UBXN6Q9BZV1 441 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 NDEL1Q9GZM8 345 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CPED1A4D0V7 1026 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 FKTNO75072 461 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GYPCP04921 128 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CHRM5P08912 532 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 C21orf59P57076 290 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 PDK1Q15118 436 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TOP1MTQ969P6 601 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CLDND1Q9NY35 253 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF500O60304 480 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 NAMPTP43490 491 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CASP5P51878 434 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 TTLL9Q3SXZ7 439 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 AMZ1Q400G9 498 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 AP1ARQ63HQ0 302 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 GPR142Q7Z601 462 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 STX19Q8N4C7 294 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 RAD51AP1Q96B01 352 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 C18orf25Q96B23 403 aaPredicted RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 LMLNQ96KR4 655 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 IL17RBQ9NRM6 502 aa7.52□□□□□ -1.21
VPS13A-202ENST00000357409 CFAP20Q9Y6A4 193 aaKnown RBP7.52□□□□□ -1.21
VPS13A-202ENST00000357409 STBD1O95210 358 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 ITGA9Q13797 1035 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 ARMC12Q5T9G4 340 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TRIM72Q6ZMU5 477 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CHST15Q7LFX5 561 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-202ENST00000357409 OR5M3Q8NGP4 307 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 ZNF333Q96JL9 665 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CAPN6Q9Y6Q1 641 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 SPACA6W5XKT8 324 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TRIM66O15016 1216 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TREHO43280 583 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 FGBP02675 491 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 SNRPAP09012 282 aaKnown RBP7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CDH13P55290 713 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 MC1RQ01726 317 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TRIM25Q14258 630 aaKnown RBP7.51□□□□□ -1.21
VPS13A-202ENST00000357409 ZDHHC20Q5W0Z9 365 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CENPPQ6IPU0 288 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 LRRC74BQ6ZQY2 392 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 LRRC34Q8IZ02 419 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TMEM159Q96B96 161 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 HDHD2Q9H0R4 259 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 PHTF1Q9UMS5 762 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 A6NNZ2 444 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CCL22O00626 93 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 PSMD3O43242 534 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CRATP43155 626 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 KLC1Q07866 573 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 MTFR1Q15390 333 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TUBB8Q3ZCM7 444 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 MRNIPQ6NTE8 343 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-202ENST00000357409 CLHC1Q8NHS4 586 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 TEKT5Q96M29 485 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 GID8Q9NWU2 228 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 IGSF9BQ9UPX0 1349 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 NEO1Q92859 1461 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 MANSC4A6NHS7 340 aaPredicted RBP7.51□□□□□ -1.21
VPS13A-202ENST00000357409 FAM47E-STBD1D6RA91 191 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 FSBPO95073 299 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 NAB2Q15742 525 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 MAPK11Q15759 364 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 GSTA3Q16772 222 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 EDRF1Q3B7T1 1238 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 ERMARDQ5T6L9 678 aa7.51□□□□□ -1.21
VPS13A-202ENST00000357409 FAM228AQ86W67 206 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms