RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 KLKB1P03952 638 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 RALAP11233 206 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 NEFHP12036 1026 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 KRT10P13645 584 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 CASP4P49662 377 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 CAMK2GQ13555 558 aaPredicted RBP11.7□□□□□ -0.54
RTN3-204ENST00000354497 ZSCAN23Q3MJ62 389 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 CAVIN1Q6NZI2 390 aaKnown RBP11.7□□□□□ -0.54
RTN3-204ENST00000354497 ERICH1Q86X53 443 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 NELFCDQ8IXH7 590 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 C12orf29Q8N999 325 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 ZNF516Q92618 1163 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 CLIC6Q96NY7 704 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 XYLT2Q9H1B5 865 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 GDF3Q9NR23 364 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 AGPAT3Q9NRZ7 376 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 WDR70Q9NW82 654 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 HMGXB4Q9UGU5 601 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 AGO1Q9UL18 857 aaKnown RBP11.7□□□□□ -0.54
RTN3-204ENST00000354497 CLCA2Q9UQC9 943 aa11.7□□□□□ -0.54
RTN3-204ENST00000354497 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.7□□□□□ -0.546e-7■■■□□ 14.6
RTN3-204ENST00000354497 V9GYY5 206 aaPredicted RBP11.7□□□□□ -0.54
RTN3-204ENST00000354497 FRMD3A2A2Y4 597 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 KLHL33A6NCF5 533 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 B8ZZF3 427 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 TIMM44O43615 452 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 IGHV4-34P06331 123 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 TRIM21P19474 475 aaKnown RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 EPHA8P29322 1005 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 ARRB1P49407 418 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 NDST1P52848 882 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 HNRNPH2P55795 449 aaKnown RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 PCBP4P57723 403 aaKnown RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 COG7P83436 770 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 SHBQ15464 509 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ZNF776Q68DI1 518 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 KLHDC10Q6PID8 442 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CCDC73Q6ZRK6 1079 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CLEC20AQ6ZU45 233 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CHST9Q7L1S5 443 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 RSRC2Q7L4I2 434 aaKnown RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 PRICKLE2Q7Z3G6 844 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 XXYLT1Q8NBI6 393 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ZNF248Q8NDW4 579 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ZNF397Q8NF99 534 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 SAP25Q8TEE9 199 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CSNK1G1Q9HCP0 422 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 PCDHA5Q9Y5H7 936 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 A0A1W2PPC4 97 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 SLC12A8A0AV02 714 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CCDC189A1A4V9 331 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 YKT6O15498 198 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 WISP1O95388 367 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 WNT1P04628 370 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 P4HA1P13674 534 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CD38P28907 300 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 NUCB2P80303 420 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ZBTB16Q05516 673 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 BNIP3Q12983 259 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 NCOA4Q13772 614 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 SCD5Q86SK9 330 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 RBBP8NLQ8NC74 664 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 HS3ST6Q96QI5 342 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ORAI3Q9BRQ5 295 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 SLC2A11Q9BYW1 496 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 PRSS16Q9NQE7 514 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.69□□□□□ -0.54
RTN3-204ENST00000354497 STRIP2Q9ULQ0 834 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CLIC4Q9Y696 253 aa11.69□□□□□ -0.54
RTN3-204ENST00000354497 CFAP46Q8IYW2 2715 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 COL5A1P20908 1838 aaPredicted RBP11.68□□□□□ -0.54
RTN3-204ENST00000354497 SMTNL1A8MU46 457 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 HHLA1C9JL84 531 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 C6P13671 934 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 CKMT2P17540 419 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 HOXD13P35453 343 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 UCNP55089 124 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 INSM1Q01101 510 aaPredicted RBP11.68□□□□□ -0.54
RTN3-204ENST00000354497 CEBPZQ03701 1054 aaKnown RBP11.68□□□□□ -0.54
RTN3-204ENST00000354497 MPPE1Q53F39 396 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 NCEH1Q6PIU2 408 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 BRAPQ7Z569 592 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 PDILTQ8N807 584 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 WFIKKN2Q8TEU8 576 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 KCNE4Q8WWG9 221 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 TSC1Q92574 1164 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 ZNF592Q92610 1267 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 GOLGA1Q92805 767 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 ITFG2Q969R8 447 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 CDK5RAP1Q96SZ6 601 aaKnown RBP11.68□□□□□ -0.54
RTN3-204ENST00000354497 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.68□□□□□ -0.54
RTN3-204ENST00000354497 TMEM245Q9H330 911 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 MTG2Q9H4K7 406 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 FBRSQ9HAH7 460 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 ABCB8Q9NUT2 735 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 FBXL12Q9NXK8 326 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 FBXO2Q9UK22 296 aaPredicted RBP11.68□□□□□ -0.54
RTN3-204ENST00000354497 SMC3Q9UQE7 1217 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 JRKLQ9Y4A0 524 aa11.68□□□□□ -0.54
RTN3-204ENST00000354497 PAXBP1Q9Y5B6 917 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms