RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 ADAM15Q13444 863 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 LINGO4Q6UY18 593 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 ZNF366Q8N895 744 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 PABPC5Q96DU9 382 aaKnown RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 RSPRY1Q96DX4 576 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 HES6Q96HZ4 224 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 TTLL2Q9BWV7 592 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 UBE2ZQ9H832 354 aaPredicted RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 CYLDQ9NQC7 956 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 ZDHHC7Q9NXF8 308 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 CLIC5Q9NZA1 410 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 TTC7AQ9ULT0 858 aaPredicted RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 ASB3Q9Y575 518 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 PCDHA3Q9Y5H8 950 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 ZFP37Q9Y6Q3 630 aaPredicted RBP9.51□□□□□ -0.89
USP4-202ENST00000351842 DOCK8Q8NF50 2099 aa9.51□□□□□ -0.89
USP4-202ENST00000351842 F5H5T6 163 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 H0Y626 953 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 STK25O00506 426 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TBL1XO60907 577 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 NEBLO76041 1014 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 GLI1P08151 1106 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 ERCC2P18074 760 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 OR1E1P30953 314 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CTNNA1P35221 906 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 SLC1A1P43005 524 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 PSEN1P49768 467 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 AP1B1Q10567 949 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 DPYSL3Q14195 570 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 MS4A13Q5J8X5 152 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 FAXCQ5TGI0 409 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 LRRC31Q6UY01 552 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 STRADAQ7RTN6 431 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TMEM25Q86YD3 366 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 MAP7D3Q8IWC1 876 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 YAF2Q8IY57 180 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TDRD5Q8NAT2 981 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 EXOC2Q96KP1 924 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 GDAP1L1Q96MZ0 367 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 LGMNQ99538 433 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 BBS2Q9BXC9 721 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 LRRC3Q9BY71 257 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 LMAN2LQ9H0V9 348 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TASP1Q9H6P5 420 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 RBM12Q9NTZ6 932 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.5□□□□□ -0.894e-6■■■■□ 20.5
USP4-202ENST00000351842 OGFRQ9NZT2 677 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 ZNF148Q9UQR1 794 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TTC24A2A3L6 582 aaPredicted RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 E9PAM4 449 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 F9P00740 461 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 HNRNPA1P09651 372 aaKnown RBP eCLIP9.5□□□□□ -0.89
USP4-202ENST00000351842 ARSAP15289 507 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 L1CAMP32004 1257 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 PEX5P50542 639 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CDH18Q13634 790 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 BOLA3Q53S33 107 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 NADSYN1Q6IA69 706 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CYP4V2Q6ZWL3 525 aaPredicted RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 GPR149Q86SP6 731 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CCDC105Q8IYK2 499 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 ATP6V0D2Q8N8Y2 350 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 PCDH19Q8TAB3 1148 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 MAGOHBQ96A72 148 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 RPL10LQ96L21 214 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 MYRFLQ96LU7 910 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CSPG4P5Q96PW8 444 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 EPAS1Q99814 870 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TMEM121Q9BTD3 319 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 UBXN6Q9BZV1 441 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 MUC3BQ9H195 1237 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 AMACRQ9UHK6 382 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 FZD10Q9ULW2 581 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 CLEC4EQ9ULY5 219 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TLR6Q9Y2C9 796 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 ZSCAN5CA6NGD5 496 aaPredicted RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 HEPACAM2A8MVW5 462 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 PGRMC1O00264 195 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 ZNF197O14709 1029 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 IL9P15248 144 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 GDI1P31150 447 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 RPL34P49207 117 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 CXCR3P49682 368 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TRIP4Q15650 581 aaPredicted RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 LY6G5CQ5SRR4 150 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 IL31Q6EBC2 164 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 ARHGAP36Q6ZRI8 547 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TADA2BQ86TJ2 420 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 NOA1Q8NC60 698 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 ACTL9Q8TC94 416 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 FNIP1Q8TF40 1166 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 SORCS1Q8WY21 1168 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 TMA16Q96EY4 203 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 OLA1Q9NTK5 396 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 PIH1D1Q9NWS0 290 aaKnown RBP9.5□□□□□ -0.89
USP4-202ENST00000351842 CLUHO75153 1309 aa9.5□□□□□ -0.89
USP4-202ENST00000351842 A0A0D9SEW6 157 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 MIF4GDA9UHW6 222 aaKnown RBP9.49□□□□□ -0.89
USP4-202ENST00000351842 SGK1O00141 431 aa9.49□□□□□ -0.89
USP4-202ENST00000351842 CBX4O00257 560 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms