RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 CMASQ8NFW8 434 aaPredicted RBP16.33■□□□□ 0.2
HMGA1-202ENST00000347617 RTP4Q96DX8 246 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 RTKNQ9BST9 563 aa16.33■□□□□ 0.2
HMGA1-202ENST00000347617 ZC3H7BQ9UGR2 993 aaKnown RBP16.33■□□□□ 0.2
HMGA1-202ENST00000347617 HNRNPRO43390 633 aaKnown RBP16.32■□□□□ 0.2
HMGA1-202ENST00000347617 GLRA3O75311 464 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 EDN1P05305 212 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 ACOT2P49753 483 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 MTTPP55157 894 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 YWHAZP63104 245 aaKnown RBP16.32■□□□□ 0.2
HMGA1-202ENST00000347617 DYNLT1P63172 113 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 MBTD1Q05BQ5 628 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 NAB1Q13506 487 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 RNF111Q6ZNA4 994 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 ZNF410Q86VK4 478 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 WDR49Q8IV35 697 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 NUP93Q8N1F7 819 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 FAM71DQ8N9W8 422 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 TRAPPC12Q8WVT3 735 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 FAF2Q96CS3 445 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 CFAP36Q96G28 342 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 HAUS8Q9BT25 410 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 MECRQ9BV79 373 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 IFT122Q9HBG6 1241 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 USP29Q9HBJ7 922 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 POPDC2Q9HBU9 364 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 ZNF510Q9Y2H8 683 aa16.32■□□□□ 0.2
HMGA1-202ENST00000347617 FAM159BA6NKW6 160 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 SIN3BO75182 1162 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 LRCH4O75427 683 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 F2P00734 622 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 SERPINE1P05121 402 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CLCN3P51790 818 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 PCBP1Q15365 356 aaKnown RBP eCLIP16.31■□□□□ 0.24e-50■■■■■ 45.9
HMGA1-202ENST00000347617 GRIK4Q16099 956 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 ATF7IP2Q5U623 682 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 SPOPLQ6IQ16 392 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 DARS2Q6PI48 645 aaKnown RBP16.31■□□□□ 0.2
HMGA1-202ENST00000347617 NDUFAF2Q8N183 169 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 ATP2A3Q93084 1043 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 DCUN1D1Q96GG9 259 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 TCHPQ9BT92 498 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 KLC2Q9H0B6 622 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 SMYD3Q9H7B4 428 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 VPS28Q9UK41 221 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CPSF3Q9UKF6 684 aaKnown RBP16.31■□□□□ 0.2
HMGA1-202ENST00000347617 LZTS1Q9Y250 596 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 NRCAMQ92823 1304 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 A0A0J9YVX5 310 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 TMEM88BA6NKF7 163 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 MEI4A8MW99 385 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 H0YJX3 145 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 H3BNX3 289 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 DYNC1LI2O43237 492 aaPredicted RBP16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CD48P09326 243 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 KITP10721 976 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CPT1AP50416 773 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 EPHB1P54762 984 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 INHBCP55103 352 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 ADARP55265 1226 aaKnown RBP16.31■□□□□ 0.2
HMGA1-202ENST00000347617 APOFQ13790 326 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CNGA3Q16281 694 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 INSCQ1MX18 579 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 MARCH8Q5T0T0 291 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 METTL21CQ5VZV1 264 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 MBLAC2Q68D91 279 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 KCTD6Q8NC69 237 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 GSDMBQ8TAX9 411 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 DLG3Q92796 817 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 LHX5Q9H2C1 402 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 FLRT1Q9NZU1 646 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CNOT11Q9UKZ1 510 aaKnown RBP16.31■□□□□ 0.2
HMGA1-202ENST00000347617 DNAJC16Q9Y2G8 782 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 INPP5FQ9Y2H2 1132 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 NUB1Q9Y5A7 615 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 RPS6KL1Q9Y6S9 549 aa16.31■□□□□ 0.2
HMGA1-202ENST00000347617 CCDC195A0A1B0GUA6 201 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 INO80B-WBP1J3KQ70 363 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 TNPO2O14787 897 aaKnown RBP16.3■□□□□ 0.2
HMGA1-202ENST00000347617 SLC22A2O15244 555 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 DNAJA2O60884 412 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 PROCP04070 461 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 SPATA31D3P0C874 917 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 ZNF286BP0CG31 522 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 KRT3P12035 628 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 ITGAXP20702 1163 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 PMLP29590 882 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 SLC1A6P48664 564 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 HDAC4P56524 1084 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 CRHR2Q13324 411 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 NCOA4Q13772 614 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 NADK2Q4G0N4 442 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 FASTKD1Q53R41 847 aaKnown RBP16.3■□□□□ 0.2
HMGA1-202ENST00000347617 TEDDM1Q5T9Z0 273 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 PDPK2PQ6A1A2 396 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 FBXL19Q6PCT2 694 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 C16orf89Q6UX73 402 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 SPATA31D4Q6ZUB0 917 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 ZNF554Q86TJ5 538 aa16.3■□□□□ 0.2
HMGA1-202ENST00000347617 SLC4A11Q8NBS3 891 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms