RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 ABL2P42684 1182 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 DEFB103AP81534 67 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 ROR1Q01973 937 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 KLF1Q13351 362 aaPredicted RBP13.47□□□□□ -0.25
COL18A1-201ENST00000342220 IKBKEQ14164 716 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 EFHC2Q5JST6 749 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 TMEM169Q96HH4 297 aa13.47□□□□□ -0.25
COL18A1-201ENST00000342220 TGS1Q96RS0 853 aaKnown RBP13.47□□□□□ -0.25
COL18A1-201ENST00000342220 ZMYND8Q9ULU4 1186 aaPredicted RBP13.47□□□□□ -0.25
COL18A1-201ENST00000342220 ZNF623O75123 536 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 AVILO75366 819 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 STX2P32856 288 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 CDH5P33151 784 aaPredicted RBP13.46□□□□□ -0.25
COL18A1-201ENST00000342220 ACADSBP45954 432 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 FAAP100Q0VG06 881 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 RTP2Q5QGT7 225 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 KIF2BQ8N4N8 673 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 CERS4Q9HA82 394 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 PCDH18Q9HCL0 1135 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 NEU2Q9Y3R4 380 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 LIASO43766 372 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 PDIA2Q13087 525 aaKnown RBP13.46□□□□□ -0.25
COL18A1-201ENST00000342220 TAF11Q15544 211 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 C10orf120Q5SQS8 335 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 TRIM42Q8IWZ5 723 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 CTAGE3PQ8IX95 158 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 RBM15Q96T37 977 aaKnown RBP eCLIP13.46□□□□□ -0.25
COL18A1-201ENST00000342220 CYP4F11Q9HBI6 524 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 POPDC2Q9HBU9 364 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 TRPC7Q9HCX4 862 aa13.46□□□□□ -0.25
COL18A1-201ENST00000342220 XPO7Q9UIA9 1087 aaKnown RBP13.46□□□□□ -0.25
COL18A1-201ENST00000342220 FAM72CH0Y354 149 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 EEF2KO00418 725 aaKnown RBP13.46□□□□□ -0.26
COL18A1-201ENST00000342220 MAP3K13O43283 966 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 USP12O75317 370 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 TPI1P60174 286 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 CAV1Q03135 178 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 DPYSL3Q14195 570 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 DSC3Q14574 896 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 FASTKD3Q14CZ7 662 aaKnown RBP13.46□□□□□ -0.26
COL18A1-201ENST00000342220 BOLA3Q53S33 107 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 FAM72AQ5TYM5 149 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 FAM72DQ6L9T8 149 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 FUT10Q6P4F1 479 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 FAM72BQ86X60 149 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 TMEM86AQ8N2M4 240 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 GALNT15Q8N3T1 639 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 KCNN1Q92952 543 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 TMEM161AQ9NX61 479 aa13.46□□□□□ -0.26
COL18A1-201ENST00000342220 A0A1W2PQH9 124 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 A6NHS1 94 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ADAM12O43184 909 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 NQO1P15559 274 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 MATKP42679 507 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 YWHAGP61981 247 aaKnown RBP eCLIP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ITKQ08881 620 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 SPARCL1Q14515 664 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 GALNTL6Q49A17 601 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ARHGAP17Q68EM7 881 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CGB2Q6NT52 195 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 RBM12BQ8IXT5 1001 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 FITM2Q8N6M3 262 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 PCDH19Q8TAB3 1148 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 PRCCQ92733 491 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 FBXO32Q969P5 355 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CFAP36Q96G28 342 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 RMDN2Q96LZ7 410 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 RTP3Q9BQQ7 232 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 MPP6Q9NZW5 540 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 TRIM33Q9UPN9 1127 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CFAP73A6NFT4 308 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ATP6V1G1O75348 118 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 GNRH1P01148 92 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 PDHA1P08559 390 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 MAGEA10P43363 369 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CRADDP78560 199 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 TMED2Q15363 201 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CCNG2Q16589 344 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 MFSD4BQ5TF39 518 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 HSFY1Q96LI6 401 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 TSEN34Q9BSV6 310 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 COLEC11Q9BWP8 271 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 UBN1Q9NPG3 1134 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 PHF24Q9UPV7 400 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ARL2BPQ9Y2Y0 163 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 PRRG1O14668 218 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CDH16O75309 829 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 LUC7L3O95232 432 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 IGHA2P01877 340 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 VCPP55072 806 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 TFDP2Q14188 446 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 ACBD5Q5T8D3 534 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 KCNT2Q6UVM3 1135 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 C4orf50Q6ZRC1 276 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CCHCR1Q8TD31 782 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 KCTD15Q96SI1 283 aaPredicted RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 TRIM56Q9BRZ2 755 aaKnown RBP13.45□□□□□ -0.26
COL18A1-201ENST00000342220 YIPF2Q9BWQ6 316 aa13.45□□□□□ -0.26
COL18A1-201ENST00000342220 CHMP2BQ9UQN3 213 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms