RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 F5H5T6 163 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 SRGAP2O75044 1071 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 FTCDO95954 541 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 CYP17A1P05093 508 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 SGSHP51688 502 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 ARTNQ5T4W7 220 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 PEX26Q7Z412 305 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 LGI2Q8N0V4 545 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 TRIM58Q8NG06 486 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 TMA16Q96EY4 203 aaKnown RBP22.91■■□□□ 1.26
SDC3-202ENST00000339394 PRICKLE1Q96MT3 831 aaPredicted RBP22.91■■□□□ 1.26
SDC3-202ENST00000339394 NECAB3Q96P71 396 aaPredicted RBP22.91■■□□□ 1.26
SDC3-202ENST00000339394 ALS2CR12Q96Q35 445 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.91■■□□□ 1.26
SDC3-202ENST00000339394 AMFRQ9UKV5 643 aa22.91■■□□□ 1.26
SDC3-202ENST00000339394 E9PAM4 449 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 L1CAMP32004 1257 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 NRG1Q02297 640 aaPredicted RBP22.9■■□□□ 1.26
SDC3-202ENST00000339394 DPYSL2Q16555 572 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 ANO4Q32M45 955 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 LRRC31Q6UY01 552 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 ZNF683Q8IZ20 524 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 TTC8Q8TAM2 541 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 BHMTQ93088 406 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 IGSF8Q969P0 613 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 SORCS3Q9UPU3 1222 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 ZKSCAN5Q9Y2L8 839 aa22.9■■□□□ 1.26
SDC3-202ENST00000339394 PSTPIP1O43586 416 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 LRIG2O94898 1065 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 SRFP11831 508 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 RPS24P62847 133 aaKnown RBP22.89■■□□□ 1.26
SDC3-202ENST00000339394 SEMA3BQ13214 749 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 MPPE1Q53F39 396 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 PPP6R3Q5H9R7 873 aaPredicted RBP22.89■■□□□ 1.26
SDC3-202ENST00000339394 FYB2Q5VWT5 728 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 CFAP52Q8N1V2 620 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 DDI1Q8WTU0 396 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 RPRD1AQ96P16 312 aaPredicted RBP22.89■■□□□ 1.26
SDC3-202ENST00000339394 KCTD15Q96SI1 283 aaPredicted RBP22.89■■□□□ 1.26
SDC3-202ENST00000339394 BBS2Q9BXC9 721 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 TRPV5Q9NQA5 729 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 PLK2Q9NYY3 685 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 MARK1Q9P0L2 795 aa22.89■■□□□ 1.26
SDC3-202ENST00000339394 PACSIN2Q9UNF0 486 aaPredicted RBP22.89■■□□□ 1.26
SDC3-202ENST00000339394 IGLV3-10A0A075B6K4 115 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 CREB3O43889 395 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 ADH1CP00326 375 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 CYBBP04839 570 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 C5orf22Q49AR2 442 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 ZFYVE27Q5T4F4 411 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 MANEALQ5VSG8 457 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 CPA6Q8N4T0 437 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 CSGALNACT1Q8TDX6 532 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 KRT35Q92764 455 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 EPAS1Q99814 870 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 SLC2A4RGQ9NR83 387 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 KLHL11Q9NVR0 708 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 DUSP12Q9UNI6 340 aa22.89■■□□□ 1.25
SDC3-202ENST00000339394 DRGXA6NNA5 263 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 NEDD8-MDP1E9PL57 170 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 KIF5CO60282 957 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 PENKP01210 267 aaPredicted RBP22.88■■□□□ 1.25
SDC3-202ENST00000339394 ADH5P11766 374 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 CTNNA1P35221 906 aaKnown RBP22.88■■□□□ 1.25
SDC3-202ENST00000339394 MARCKSL1P49006 195 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 CDH6P55285 790 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 NR1H3Q13133 447 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 ITPRIPL2Q3MIP1 535 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 RABGAP1LQ5R372 815 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 KCTD6Q8NC69 237 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 HJURPQ8NCD3 748 aaPredicted RBP22.88■■□□□ 1.25
SDC3-202ENST00000339394 RAPGEF5Q92565 580 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.88■■□□□ 1.25
SDC3-202ENST00000339394 PCDHA3Q9Y5H8 950 aa22.88■■□□□ 1.25
SDC3-202ENST00000339394 CCDC66A2RUB6 948 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 TBL1XO60907 577 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 CD48P09326 243 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 TYRP14679 529 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 IRAK1P51617 712 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 ARSEP51690 589 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 PFKPQ01813 784 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 GAD2Q05329 585 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 MPP7Q5T2T1 576 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 FAM71BQ8TC56 605 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 DNASE1L2Q92874 299 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 PCDH18Q9HCL0 1135 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 MPP6Q9NZW5 540 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 STIM2Q9P246 746 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 PPARGC1AQ9UBK2 798 aaKnown RBP22.87■■□□□ 1.25
SDC3-202ENST00000339394 NEU3Q9UQ49 428 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 TRIOO75962 3097 aa22.87■■□□□ 1.25
SDC3-202ENST00000339394 TCF20Q9UGU0 1960 aaKnown RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 TYW5A2RUC4 315 aaKnown RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 HOXC11O43248 304 aaPredicted RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 GOT1P17174 413 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 CTNNA2P26232 953 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 HOXD9P28356 352 aaPredicted RBP22.86■■□□□ 1.25
SDC3-202ENST00000339394 GJA4P35212 333 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 KRT81Q14533 505 aa22.86■■□□□ 1.25
SDC3-202ENST00000339394 ALFQ53S48 1182 aa22.86■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms