RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 PRDM16Q9HAZ2 1276 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 A0A0A0MRY4 1105 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 PPP1R12AO14974 1030 aaPredicted RBP23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 TCEA3O75764 348 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 YWHAQP27348 245 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 SPOUT1Q5T280 376 aaKnown RBP23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 LEKR1Q6ZMV7 388 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 CAND1Q86VP6 1230 aaKnown RBP23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 FBXO22Q8NEZ5 403 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 FBXO32Q969P5 355 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 SPATA13Q96N96 652 aa23.1■■□□□ 1.29
PDLIM2-203ENST00000339162 MYO18AQ92614 2054 aaKnown RBP23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 E7EVH7 732 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 H7C4K7 107 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 EIF3HO15372 352 aaKnown RBP eCLIP23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 IVLP07476 585 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 CSF2RAP15509 400 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 LSP1P33241 339 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 DEFB103AP81534 67 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 WASHC5Q12768 1159 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 TAF10Q12962 218 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 ATP11CQ8NB49 1132 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 COLGALT1Q8NBJ5 622 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 WDR27A2RRH5 827 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 CDH16O75309 829 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 GLUD2P49448 558 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 EFEMP1Q12805 493 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 TMED2Q15363 201 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 SPPL2BQ8TCT7 592 aa23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 FCRL2Q96LA5 508 aaPredicted RBP23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 STMN4Q9H169 189 aaPredicted RBP23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 MAGED2Q9UNF1 606 aaPredicted RBP23.09■■□□□ 1.29
PDLIM2-203ENST00000339162 OR1D2P34982 312 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 MMP13P45452 471 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 BRMS1LQ5PSV4 323 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 RASIP1Q5U651 963 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 ZNF567Q8N184 647 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 FBF1Q8TES7 1133 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 IGSF21Q96ID5 467 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 PHACTR1Q9C0D0 580 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 OSBPL2Q9H1P3 480 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 RABGEF1Q9UJ41 708 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 NEU3Q9UQ49 428 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 TEX264Q9Y6I9 313 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 NUP205Q92621 2012 aa23.08■■□□□ 1.29
PDLIM2-203ENST00000339162 HAPLN1P10915 354 aaPredicted RBP23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 USP41Q3LFD5 358 aa23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 PPP1R21Q6ZMI0 780 aa23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 PDZD4Q76G19 769 aaPredicted RBP23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 MIB1Q86YT6 1006 aa23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 PPANQ9NQ55 473 aaKnown RBP23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 PIH1D1Q9NWS0 290 aaKnown RBP23.08■■□□□ 1.28
PDLIM2-203ENST00000339162 TRIM43BA6NCK2 446 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 ACRP10323 421 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 CHN1P15882 459 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 GJA8P48165 433 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 SEC24CP53992 1094 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 PSMD5Q16401 504 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 KIAA1841Q6NSI8 718 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 ZNF534Q76KX8 674 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 TOP1MTQ969P6 601 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 TRIM43Q96BQ3 446 aaPredicted RBP23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 SERPINB11Q96P15 392 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 TRIM56Q9BRZ2 755 aaKnown RBP23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 C11orf49Q9H6J7 331 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 EURLQ9NYK6 297 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 IL37Q9NZH6 218 aa23.07■■□□□ 1.28
PDLIM2-203ENST00000339162 STK10O94804 968 aaKnown RBP23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 ATF6P18850 670 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 PSMB4P28070 264 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 MAGEA6P43360 314 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 FBXO46Q6PJ61 603 aaPredicted RBP23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 C4orf22Q6V702 233 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 PDCD7Q8N8D1 485 aaKnown RBP23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 CFAP36Q96G28 342 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 HAPLN3Q96S86 360 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 KCNU1A8MYU2 1149 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 SEMA5AQ13591 1074 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 PPP2R5DQ14738 602 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 PID1Q7Z2X4 250 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 C14orf80Q86SX3 495 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 SRRM1Q8IYB3 904 aaKnown RBP23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 NDFIP2Q9NV92 336 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 LGALS13Q9UHV8 139 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 HS3ST4Q9Y661 456 aa23.06■■□□□ 1.28
PDLIM2-203ENST00000339162 FAM92AA1XBS5 289 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 EFEMP2O95967 443 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 PHBP35232 272 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 FOXR1Q6PIV2 292 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 FAM43BQ6ZT52 329 aaPredicted RBP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 TAOK1Q7L7X3 1001 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 MPP6Q9NZW5 540 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 OPHN1O60890 802 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 HMBSP08397 361 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 PTPN3P26045 913 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 GARSP41250 739 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 PPIDQ08752 370 aaKnown RBP23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 ARTNQ5T4W7 220 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 ARHGAP36Q6ZRI8 547 aa23.05■■□□□ 1.28
PDLIM2-203ENST00000339162 ARHGAP18Q8N392 663 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms