RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ZBTB41Q5SVQ8 909 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 C15orf39Q6ZRI6 1047 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SETD3Q86TU7 594 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 FBXO22Q8NEZ5 403 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ACSF2Q96CM8 615 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CDC42EP4Q9H3Q1 356 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PCDH18Q9HCL0 1135 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 USH1CQ9Y6N9 552 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MYBPHLA2RUH7 354 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SRRM3A6NNA2 597 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 HGSO14964 777 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SMIM24O75264 130 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 GLRA3O75311 464 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SCNN1BP51168 640 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MLLT6P55198 1093 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 OCRLQ01968 901 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 NEPROQ6NW34 567 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SLC39A4Q6P5W5 647 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TAS2R42Q7RTR8 314 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 STK40Q8N2I9 435 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PDCD7Q8N8D1 485 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ARL10Q8N8L6 244 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PBXIP1Q96AQ6 731 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ERVK-5Q9HDB9 667 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TRMT13Q9NUP7 481 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TAS2R14Q9NYV8 317 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 APPL1Q9UKG1 709 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 G3BP2Q9UN86 482 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 LRP5O75197 1615 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 RB1P06400 928 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ABHD2P08910 425 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 HOXD8P13378 290 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SSTR3P32745 418 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 GJA5P36382 358 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 DBN1Q16643 649 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PTRHD1Q6GMV3 140 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 RFX8Q6ZV50 586 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MON1BQ7L1V2 547 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ARCQ7LC44 396 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 USP33Q8TEY7 942 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TFAP2BQ92481 460 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 XYLT2Q9H1B5 865 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MAGEH1Q9H213 219 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 GOLGA2P5Q9HBQ8 144 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ARFGEF2Q9Y6D5 1785 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 AOC2O75106 756 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 TMCC1O94876 653 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 AKT1P31749 480 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 HCAR3P49019 387 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 MAPKAPK2P49137 400 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ARFIP2P53365 341 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 NAA20P61599 178 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ADCY1Q08828 1119 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 GRM3Q14832 879 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CST9Q5W186 159 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SPDYE1Q8NFV5 336 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PLEKHO2Q8TD55 490 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SMG7Q92540 1137 aaKnown RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 EGFL8Q99944 293 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 VCX3BQ9H321 246 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 C11orf49Q9H6J7 331 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SIX4Q9UIU6 781 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 DNPEPQ9ULA0 475 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 C4AP0C0L4 1744 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CHADO15335 359 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SOAT2O75908 522 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CXCL14O95715 111 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 FGF1P05230 155 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ZNF7P17097 686 aaPredicted RBP7.04□□□□□ -1.28
SF3B1-201ENST00000335508 HOXD13P35453 343 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 HSD17B3P37058 310 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 VEGFBP49765 207 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SLC20A2Q08357 652 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 DUSP4Q13115 394 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 NOMO1Q15155 1222 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SH2D4BQ5SQS7 431 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 AGAP9Q5VTM2 703 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PDPK2PQ6A1A2 396 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 PMF1Q6P1K2 205 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 RASGEF1CQ8N431 466 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 NIPA2Q8N8Q9 360 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 KAT2BQ92831 832 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 BORCS6Q96GS4 357 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 SERPINI1Q99574 410 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 CLPBQ9H078 707 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 RASSF4Q9H2L5 321 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ACSS3Q9H6R3 686 aa7.04□□□□□ -1.28
SF3B1-201ENST00000335508 ESRRAP11474 423 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CDH5P33151 784 aaPredicted RBP7.03□□□□□ -1.28
SF3B1-201ENST00000335508 MMP13P45452 471 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 CLDN10P78369 228 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FPGSQ05932 587 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FAM47EQ6ZV65 393 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FRA10AC1Q70Z53 315 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 PALB2Q86YC2 1186 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 LGI2Q8N0V4 545 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 COLGALT1Q8NBJ5 622 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 OTUB2Q96DC9 234 aa7.03□□□□□ -1.28
SF3B1-201ENST00000335508 FAR2Q96K12 515 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms