RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ZBED8Q8IZ13 594 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 VPS52Q8N1B4 723 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 CCNYQ8ND76 341 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 CELF6Q96J87 481 aaKnown RBP18.98■□□□□ 0.63
USP39-201ENST00000323701 EPAS1Q99814 870 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 OXCT2Q9BYC2 517 aaPredicted RBP18.98■□□□□ 0.63
USP39-201ENST00000323701 PAK5Q9P286 719 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 TLDC2A0PJX2 215 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 GCATO75600 419 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 ZDHHC11BP0C7U3 371 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 IRAK1P51617 712 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 WASHC5Q12768 1159 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 PPP2R5DQ14738 602 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 HIF1AQ16665 826 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 CAPN12Q6ZSI9 719 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 SERPINB11Q96P15 392 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 HAPLN3Q96S86 360 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 TSPYL1Q9H0U9 437 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 CLIC5Q9NZA1 410 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 TLR6Q9Y2C9 796 aa18.98■□□□□ 0.63
USP39-201ENST00000323701 C5orf60A6NFR6 353 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 KCNK1O00180 336 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 BAIAP3O94812 1187 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 HMBSP08397 361 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 HMGA1P17096 107 aaKnown RBP18.97■□□□□ 0.63
USP39-201ENST00000323701 LAG3P18627 525 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 RPL10AP62906 217 aaKnown RBP18.97■□□□□ 0.63
USP39-201ENST00000323701 LONRF1Q17RB8 773 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 C10orf120Q5SQS8 335 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 PCGF5Q86SE9 256 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 DDX53Q86TM3 631 aaKnown RBP18.97■□□□□ 0.63
USP39-201ENST00000323701 HOOK3Q86VS8 718 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 IGDCC3Q8IVU1 814 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 HERC2P3Q9BVR0 1158 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 TTLL2Q9BWV7 592 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 MCOLN1Q9GZU1 580 aa18.97■□□□□ 0.63
USP39-201ENST00000323701 TLR8Q9NR97 1041 aaKnown RBP18.97■□□□□ 0.63
USP39-201ENST00000323701 BCCIPQ9P287 314 aaKnown RBP eCLIP18.97■□□□□ 0.63
USP39-201ENST00000323701 AFF4Q9UHB7 1163 aaKnown RBP18.97■□□□□ 0.63
USP39-201ENST00000323701 RNF103O00237 685 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ALOX15BO15296 676 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 GJB5O95377 273 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 EIF3BP55884 814 aaKnown RBP18.96■□□□□ 0.63
USP39-201ENST00000323701 PDK1Q15118 436 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ANKRD20A2Q5SQ80 823 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ANKRD20A1Q5TYW2 823 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ANKRD20A3Q5VUR7 823 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ARHGAP18Q8N392 663 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 FOXP3Q9BZS1 431 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 CYP4F11Q9HBI6 524 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 MPP6Q9NZW5 540 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 SEPT10Q9P0V9 454 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 FOXO6A8MYZ6 492 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 EFCAB14O75071 495 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 SPATA31D3P0C874 917 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ACTN2P35609 894 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 TBX4P57082 545 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 ARHGAP36Q6ZRI8 547 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 SPATA31D4Q6ZUB0 917 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 PRDM16Q9HAZ2 1276 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 MARCH2Q9P0N8 246 aa18.96■□□□□ 0.63
USP39-201ENST00000323701 CLUHO75153 1309 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 HACD1B0YJ81 288 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 TLR5O60602 858 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 APRTP07741 180 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 GRIA1P42261 906 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 GPX6P59796 221 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 CTNNAL1Q9UBT7 734 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 NOVA2Q9UNW9 492 aaKnown RBP18.95■□□□□ 0.62
USP39-201ENST00000323701 LCHNA4D1U4 455 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 PIAS1O75925 651 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 FGBP02675 491 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 SYN1P17600 705 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 MLLT6P55198 1093 aaPredicted RBP18.95■□□□□ 0.62
USP39-201ENST00000323701 IFI35P80217 286 aaPredicted RBP18.95■□□□□ 0.62
USP39-201ENST00000323701 CENPUQ71F23 418 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 CAND1Q86VP6 1230 aaKnown RBP18.95■□□□□ 0.62
USP39-201ENST00000323701 ARHGAP12Q8IWW6 846 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 ZNF683Q8IZ20 524 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 ZNF567Q8N184 647 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 FAM76AQ8TAV0 307 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 MYEOVQ96EZ4 313 aa18.95■□□□□ 0.62
USP39-201ENST00000323701 SHROOM3Q8TF72 1996 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 A0A0A0MRY4 1105 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 GOLGA6L10A6NI86 522 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 E7ESA3 106 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 E9PAM4 449 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 CHADO15335 359 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 TEX28O15482 410 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 FGF18O76093 207 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 HOXC13P31276 330 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 TUFMP49411 452 aaKnown RBP18.94■□□□□ 0.62
USP39-201ENST00000323701 TUBP50607 506 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 KCNQ1P51787 676 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 HTRA4P83105 476 aaPredicted RBP18.94■□□□□ 0.62
USP39-201ENST00000323701 GALNT2Q10471 571 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 BBS9Q3SYG4 887 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 TMEM240Q5SV17 173 aa18.94■□□□□ 0.62
USP39-201ENST00000323701 BZW1Q7L1Q6 419 aaKnown RBP18.94■□□□□ 0.62
USP39-201ENST00000323701 DPF3Q92784 378 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms